CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612015_at

Gene name hypothetical protein LOC100261494
Homology with Arabidopsis Similar to At5g08300: succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative (HF=4e-98)

Module size 12 genes

NF 0.56

%ile 82.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 0.97 1612015_at CF215100 hypothetical protein LOC100261494 - 4e-98 At5g08300 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative O.I. H.G. S.X.
0.64 84.7 0.97 1614924_at BQ792164 - - 1e-20 At4g21570 unknown protein O.I. H.G. S.X.
0.60 81.9 0.98 1608755_at BQ797264 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 3e-85 At4g34720 AVA-P1 O.I. H.G. S.X.
0.59 80.6 0.97 1608220_at BQ792338 hypothetical protein LOC100246826 - 1e-9 At5g59410 - O.I. H.G. S.X.
0.57 79.8 0.97 1612654_at CA809225 hypothetical protein LOC100256926 - 3e-19 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.53 75.2 0.97 1620205_at CB919689 hypothetical protein LOC100247667 - 6e-8 At2g36305 FACE2 (FARNESYLATED PROTEIN-CONVERTING ENZYME 2) O.I. H.G. S.X.
0.50 72.7 0.97 1609000_at CF203971.1 hypothetical protein LOC100264409 - 4e-23 At5g50850 MAB1 (MACCI-BOU) O.I. H.G. S.X.
0.50 72.7 0.97 1614050_at CB979311 hypothetical protein LOC100258052 - 2e-3 At2g47470 UNE5 (UNFERTILIZED EMBRYO SAC 5) O.I. H.G. S.X.
0.50 72.7 0.98 1620441_s_at BQ797264 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 3e-85 At4g34720 AVA-P1 O.I. H.G. S.X.
0.48 68.8 0.97 1615947_at CB973630 hypothetical protein LOC100263087 - 6e-41 At5g26710 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative O.I. H.G. S.X.
0.44 64.1 0.97 1609543_at CB348420 hypothetical protein LOC100263184 - 2e-105 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) O.I. H.G. S.X.
0.44 64.1 0.97 1612061_at CF404942 hypothetical protein LOC100264688 - 5e-29 At4g39820 binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.3 90.7 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.1 89.1 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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