Co-expression analysis

Gene ID	1612008_at
Gene name	hypothetical protein LOC100243222
Homology with Arabidopsis	Similar to At4g08790: nitrilase, putative (HF=1e+0)
Module size	6 genes
NF	0.44
%ile	66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.91	1612008_at	CF604996	hypothetical protein LOC100243222	-	1e+0	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1612208_at	CF608688	hypothetical protein LOC100255828	-	2e-6	At2g46620	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1615403_at	CD798952	hypothetical protein LOC100255828	-	2e-1	At1g35537	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1619906_at	CK138175.1	hypothetical protein LOC100241815	-	6e-2	At3g49845	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1606793_at	CF606029	hypothetical protein LOC100255095	-	1e+0	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.2	89.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.0	88.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
1.8	86.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.7	84.7	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
1.7	84.7	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage