Co-expression analysis

Gene ID	1611981_at
Gene name
Homology with Arabidopsis	Similar to At4g13720: inosine triphosphate pyrophosphatase, putative / HAM1 family protein (HF=6e-2)
Module size	6 genes
NF	0.40
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.93	1611981_at	CF403805	-	-	6e-2	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.93	1608541_s_at	CF201527.1	hypothetical protein LOC100244953 /// hypothetical protein LOC100267258 /// hypothetical protein LOC100256993	-	2e-2	At1g07450	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1619056_at	CB917774	hypothetical protein LOC100248590	-	2e-5	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1610465_s_at	CB982876	hypothetical LOC100245940	-	2e-13	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1615933_at	CF510942	hypothetical protein LOC100241901	-	1e+0	At5g17690	TFL2 (TERMINAL FLOWER 2)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.93	1618621_s_at	BQ800042	-	-	6e+0	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.3	90.7	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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