Co-expression analysis

Gene ID 1611976_at
Gene name hypothetical protein LOC100260879
Homology with ArabidopsisSimilar to At2g20362: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.91
%ile 99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971611976_atCF213700hypothetical protein LOC100260879-4e-1At2g20362unknown proteinO.I.H.G.S.X.
0.9198.80.971614746_atCF214284hypothetical protein LOC100259225-6e-3At2g17860pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.9198.80.981611598_atCB970208hypothetical protein LOC100244034-7e+0At5g38630ACYB-1O.I.H.G.S.X.
0.8394.60.971616000_atCF215116hypothetical protein LOC100257299-2e-1At4g35025unknown proteinO.I.H.G.S.X.
0.7792.30.971622393_atCF373123proline rich protein 1-1e+0At5g67460glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.7189.50.971614877_atCB002982hypothetical protein LOC100254752-4e-4At1g63310-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.088.2GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.987.2GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.784.7GSM436410V. riparia (VR, PI588259) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
1.683.3GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.683.3GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.84265.2.S1_at, orthologous to the query gene, 1611976_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6383.1TaAffx.84265.2.S1_atAt2g20362--4e+0At2g04930NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.8292.7TaAffx.92374.1.S1_atAt2g20362--2e-4At5g64030dehydration-responsive protein-relatedO.I.H.G.S.X.
0.6081.0Ta.11414.3.S1_atAt2g20362--3e-10At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.5374.9Ta.28090.3.S1_a_atAt2g20362--4e+0At5g49215glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.5072.4Ta.25557.1.A1_atAt2g20362--2e+0At1g66060unknown proteinO.I.H.G.S.X.
0.4767.9TaAffx.84265.1.S1_atAt2g20362--1e+0At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2532.1Ta.1440.2.S1_a_atAt2g20362--1e+0At4g32090galactosyltransferaseO.I.H.G.S.X.
0.2125.5Ta.4385.1.S1_atAt2g20362--1e-2At1g05850POM1 (POM-POM1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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