Co-expression analysis

Gene ID	1611953_at
Gene name
Homology with Arabidopsis	Similar to At1g11860: aminomethyltransferase, putative (HF=1e+0)
Module size	12 genes
NF	0.32
%ile	45.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	91.0	0.92	1611953_at	CB968896	-	-	1e+0	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.93	1619424_at	BQ800205	hypothetical protein LOC100267695	-	5e-9	At4g23550	WRKY29	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1615244_at	BQ799114	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1618643_at	CF208002	hypothetical protein LOC100248183	-	7e-1	At3g09930	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.93	1614434_at	CF208520	hypothetical protein LOC100257695	-	3e-10	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1607061_at	CF214698	hypothetical protein LOC100251235	-	2e-20	At1g75060	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1622725_at	CF513192	hypothetical protein LOC100260366	-	7e+0	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1619436_at	CF372293	hypothetical protein LOC100268063	-	5e-3	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1620170_at	CB974375	hypothetical protein LOC100246815	-	1e-4	At4g36920	AP2 (APETALA 2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1618875_s_at	CF214574	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.94	1613573_at	CF609267	hypothetical protein LOC100260045	-	6e-33	At1g53860	remorin family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1608603_at	BQ795705	hypothetical LOC100242108	-	3e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.1	89.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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