Co-expression analysis

Gene ID	1611919_at
Gene name	hypothetical protein LOC100246780
Homology with Arabidopsis	Similar to At5g01990: auxin efflux carrier family protein (HF=4e-14)
Module size	12 genes
NF	0.25
%ile	35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	0.96	1611919_at	CB919145	hypothetical protein LOC100246780	-	4e-14	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1611591_at	BQ796221	hypothetical protein LOC100241221	-	4e-3	At1g80310	sulfate transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1619114_at	CF213033	hypothetical protein LOC100254188	-	1e-31	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1612618_at	BQ792225	-	-	3e-7	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1615056_at	BQ792624	hypothetical protein LOC100258670	-	3e-16	At5g05520	outer membrane OMP85 family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1610844_at	BQ794886	hypothetical LOC100257700	-	5e-18	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1619649_at	BQ793844	hypothetical protein LOC100259453	-	1e+0	At2g34860	EDA3 (embryo sac development arrest 3)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1614476_at	CA817723	hypothetical protein LOC100261102	-	9e-19	At3g27570	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1609075_at	CF405847	hypothetical protein LOC100242672	-	1e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1607375_s_at	BQ799253	hypothetical protein LOC100243686	-	2e-4	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1621845_s_at	BQ794920	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1608835_a_at	CF518085	-	-	6e+0	At1g56280	ATDI19	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.9	87.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.8	86.0	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.7	84.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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