Co-expression analysis

Gene ID	1611915_at
Gene name	hypothetical protein LOC100257368
Homology with Arabidopsis	Similar to At5g42620: metalloendopeptidase/ zinc ion binding (HF=2e-15)
Module size	10 genes
NF	0.48
%ile	71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.98	1611915_at	BM438116	hypothetical protein LOC100257368	-	2e-15	At5g42620	metalloendopeptidase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.98	1611111_at	CF207166	hypothetical protein LOC100256502	-	3e-33	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1606803_at	CB981359	similar to Os03g0374500	-	4e+0	At4g01026	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619832_at	CA818684	hypothetical protein LOC100240976	-	1e-24	At3g44660	hda10 (histone deacetylase 10)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1611284_at	CB979301	hypothetical protein LOC100256403	-	2e-18	At4g11920	CCS52A2	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1614915_at	BQ798171	hypothetical protein LOC100265632	-	2e-15	At3g20780	ATTOP6B (topoisomerase 6 subunit B)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1616651_at	BQ796747	hypothetical protein LOC100263083	-	1e-12	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1619938_at	CF514664	hypothetical protein LOC100254408	-	2e-1	At3g51950	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1618841_s_at	CF516604	hypothetical protein LOC100259947	-	1e+0	At4g36791	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1619735_at	CF208486	hypothetical protein LOC100258926	-	1e-34	At2g15430	NRPB3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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