CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611848_at

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=4e-3)

Module size 15 genes

NF 0.30

%ile 42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 85.0 0.87 1611848_at CF568803 - - 4e-3 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.55 77.3 0.91 1617549_at CF203701.1 - - 2e-6 At3g57540 remorin family protein O.I. H.G. S.X.
0.47 67.7 0.91 1614254_at CD008037 - - 3e-1 At3g10980 unknown protein O.I. H.G. S.X.
0.36 50.7 0.91 1621537_at CF413878 - - 3e-1 At3g58840 - O.I. H.G. S.X.
0.33 45.7 0.93 1611810_at CB981503 similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase - 1e-22 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) O.I. H.G. S.X.
0.32 43.1 0.94 1609936_at CK138160.1 - - 1e-25 At1g72730 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative O.I. H.G. S.X.
0.32 43.1 0.92 1618203_at CA809351 hypothetical protein LOC100246896 - 1e+0 At4g21740 unknown protein O.I. H.G. S.X.
0.30 39.4 0.94 1609927_at CF568812 - - 1e-80 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.
0.29 37.7 0.91 1619906_at CK138175.1 hypothetical protein LOC100241815 - 6e-2 At3g49845 - O.I. H.G. S.X.
0.29 37.7 0.93 1609339_at CF518412 hypothetical protein LOC100249314 - 5e-12 At4g14900 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.27 34.0 0.92 1621469_at AY427115.1 - - 3e-2 At3g50950 disease resistance protein (CC-NBS-LRR class), putative O.I. H.G. S.X.
0.20 22.4 0.91 1610960_at CF568984 - - 2e-1 At1g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.18 19.4 0.93 1617587_at CF403573 hypothetical protein LOC100246521 - 1e+0 At4g24750 - O.I. H.G. S.X.
0.15 15.6 0.92 1609715_s_at CF201893.1 - - 3e-4 At5g27670 HTA7 (HISTONE H2A 7) O.I. H.G. S.X.
0.14 14.4 0.94 1621320_at CF202272.1 - - 5e+0 At3g18800 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.2 89.9 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
2.1 89.1 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
2.0 88.2 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
1.8 86.0 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.8 86.0 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.7 84.7 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.7 84.7 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.7 84.7 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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