Co-expression analysis

Gene ID 1611835_x_at
Gene name hypothetical protein LOC100261333
Homology with ArabidopsisSimilar to At4g22745: MBD1 (HF=3e+0)
Module size 13 genes
NF 0.76
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7992.70.911611835_x_atCF203043.1hypothetical protein LOC100261333-3e+0At4g22745MBD1O.I.H.G.S.X.
0.8795.20.961609928_x_atCF203051.1--3e-1At3g08000RNA-binding protein, putativeO.I.H.G.S.X.
0.8695.10.931607059_x_atCF201343.1--4e+0At1g72430auxin-responsive protein-relatedO.I.H.G.S.X.
0.8394.60.961607596_x_atCF205525.1--6e+0At4g01900GLB1 (GLNB1 HOMOLOG)O.I.H.G.S.X.
0.8293.90.941617639_atCB345213--2e+0At1g08810MYB60 (myb domain protein 60)O.I.H.G.S.X.
0.8093.60.941614927_x_atCF202148.1--3e-1At3g08000RNA-binding protein, putativeO.I.H.G.S.X.
0.7792.30.941616890_x_atCF202744.1--1e+1At5g40700unknown proteinO.I.H.G.S.X.
0.7591.30.951618320_atCB340841--8e+0At3g51010unknown proteinO.I.H.G.S.X.
0.6787.90.921606850_x_atCF202648.1--3e+0At2g25810TIP4O.I.H.G.S.X.
0.6787.90.941621605_x_atCF202731.1--1e+1At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.6183.20.961607919_x_atCF201014.1--4e+0At1g18080ATARCAO.I.H.G.S.X.
0.5679.40.951612889_s_atCF512929--7e-1At1g73490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5475.70.941608065_s_atCB977489hypothetical protein LOC100262258-1e+0At2g15270unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.2GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.397.2GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.495.5GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.893.4GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage