Co-expression analysis

Gene ID	1611781_at
Gene name
Homology with Arabidopsis	Similar to At5g61270: PIF7 (PHYTOCHROME-INTERACTING FACTOR7) (HF=3e-1)
Module size	7 genes
NF	0.29
%ile	40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.80	1611781_at	CD010979	-	-	3e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.93	1620976_at	CK138149.1	-	-	1e+0	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1619863_at	CF203721.1	-	-	2e+0	At1g19930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1617509_at	CB974166	-	-	2e+0	At5g07475	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1614068_at	BQ793418	-	-	1e+0	At4g36820	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1618360_at	CF204032.1	-	-	5e-13	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.95	1612870_s_at	CF201540.1	hypothetical protein LOC100267310	-	3e+0	At2g18380	transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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