Co-expression analysis

Gene ID 1611714_at
Gene name hypothetical protein LOC100264866
Homology with ArabidopsisSimilar to At2g42500: PP2A-4 (HF=2e-61)
Module size 9 genes
NF 0.64
%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.971611714_atBQ794807hypothetical protein LOC100264866-2e-61At2g42500PP2A-4O.I.H.G.S.X.
0.7591.30.981609364_atCD013445similar to thioredoxin-related protein-8e-6At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6787.90.971622665_s_atCF215188hypothetical protein LOC100246461-5e+0At5g19257unknown proteinO.I.H.G.S.X.
0.6484.70.971611538_atCB976216hypothetical protein LOC100258505-3e-12At2g35630MOR1 (MICROTUBULE ORGANIZATION 1)O.I.H.G.S.X.
0.5779.80.971612328_atCF212371hypothetical protein LOC100247770-6e+0At5g07510GRP14O.I.H.G.S.X.
0.5375.20.981618126_atCF213298hypothetical protein LOC100261549-3e-8At1g76660-O.I.H.G.S.X.
0.5072.70.971615059_atCF212962hypothetical protein LOC100246880-2e+0At2g20463-O.I.H.G.S.X.
0.4666.50.981612954_atCF404452hypothetical protein LOC100257012-4e-1At3g55070-O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.390.7GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.189.1GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.088.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147730Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation59Link to GEO
1.886.0GSM147712Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation41Link to GEO
1.784.7GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
1.784.7GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.683.3GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
1.683.3GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage