CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611705_s_at

Gene name
Homology with Arabidopsis Similar to At5g40700: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.69

%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1611705_s_at CF202744.1 - - 1e+1 At5g40700 unknown protein O.I. H.G. S.X.
0.80 93.6 0.96 1620097_x_at CF202968.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.95 1610332_x_at CF204509.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.67 87.9 0.98 1607877_x_at CF202836.1 - - 3e+1 Atcg01250 - O.I. H.G. S.X.
0.50 72.7 0.95 1621501_at CB342916 hypothetical protein LOC100243553 - 1e-3 At1g57820 VIM1 (VARIANT IN METHYLATION 1) O.I. H.G. S.X.
0.47 67.7 0.96 1618679_s_at CB343106 - - 4e-83 Atcg00280 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.94	1622286_at	CA818831	similar to photosystem II protein D2	-	0	Atcg00270	-	O.I.	H.G.	S.X.
0.55	77.3	0.94	1622099_at	CA811184	-	-	4e+0	At4g00165	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.44	64.1	0.92	1608600_at	CB972826	-	-	3e+0	At4g32780	phosphoinositide binding	O.I.	H.G.	S.X.
0.42	60.1	0.95	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	O.I.	H.G.	S.X.
0.38	53.6	0.96	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.80	1621950_s_at	CA810896	-	-	1e+1	At3g17120	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.93	1620265_at	BQ793093	-	-	0	Atcg00480	-	O.I.	H.G.	S.X.
0.31	41.3	0.93	1622208_x_at	CF203749.1	-	-	7e-1	At2g26150	ATHSFA2	O.I.	H.G.	S.X.
0.31	41.3	0.94	1607398_at	CA816260	-	-	7e-97	Atcg00650	-	O.I.	H.G.	S.X.
0.27	34.0	0.93	1606704_s_at	CF200937.1	-	-	2e-103	Atcg00580	-	O.I.	H.G.	S.X.
0.25	30.5	0.89	1609244_at	CB344330	-	-	2e-1	At3g13445	TBP1 (TATA BINDING PROTEIN 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 96.6 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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