Co-expression analysis

Gene ID	1611705_s_at
Gene name
Homology with Arabidopsis	Similar to At5g40700: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.69
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1611705_s_at	CF202744.1	-	-	1e+1	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620097_x_at	CF202968.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.95	1610332_x_at	CF204509.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607877_x_at	CF202836.1	-	-	3e+1	Atcg01250	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1621501_at	CB342916	hypothetical protein LOC100243553	-	1e-3	At1g57820	VIM1 (VARIANT IN METHYLATION 1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1221.1.S1_at, orthologous to the query gene, 1611705_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	ZmAffx.1221.1.S1_at	At5g40700	-	-	1e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.43	52.8	ZmAffx.57.1.A1_at	At5g40700	cupin family protein	-	1e+1	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.10674.1.A1_at	At5g40700	hypothetical protein LOC100194243	-	1e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.10549.1.A1_at	At5g40700	hypothetical protein LOC100277053	-	1e+0	At5g35890	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.13403.1.S1_x_at	At5g40700	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.1089.1.A1_at	At5g40700	hypothetical protein LOC100280051	-	7e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.751.1.A1_at	At5g40700	-	-	1e+1	At5g44990	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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