Co-expression analysis

Gene ID	1611705_s_at
Gene name
Homology with Arabidopsis	Similar to At5g40700: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.69
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1611705_s_at	CF202744.1	-	-	1e+1	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620097_x_at	CF202968.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.95	1610332_x_at	CF204509.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607877_x_at	CF202836.1	-	-	3e+1	Atcg01250	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1621501_at	CB342916	hypothetical protein LOC100243553	-	1e-3	At1g57820	VIM1 (VARIANT IN METHYLATION 1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HVSMEc0004B17f_x_at, orthologous to the query gene, 1611705_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	HVSMEc0004B17f_x_at	At5g40700	-	-	1e+1	At5g36960	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig1768_at	At5g40700	-	-	8e-1	At2g20616	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	rbags24c10_at	At5g40700	-	-	1e+0	At3g12880	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	rbasd13l17_s_at	At5g40700	-	-	5e+0	At2g30810	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig20570_at	At5g40700	-	-	5e+0	At3g12600	atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig8078_at	At5g40700	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig15078_at	At5g40700	-	-	5e+0	At5g59105	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig13743_at	At5g40700	-	-	1e+0	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig11371_at	At5g40700	-	-	6e+0	At5g49300	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig11961_at	At5g40700	-	-	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig4941_s_at	At5g40700	-	-	3e-2	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	HVSMEf0002E16r2_at	At5g40700	-	-	1e+0	At4g29400	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig22182_at	At5g40700	-	-	4e-1	At1g55805	BolA-like family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig25264_at	At5g40700	-	-	3e+0	At1g01010	ANAC001 (Arabidopsis NAC domain containing protein 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig20907_at	At5g40700	-	-	2e+0	At4g18425	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig14754_at	At5g40700	-	-	7e+0	At4g04630	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	rbags21n02_at	At5g40700	-	-	3e-1	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig13789_at	At5g40700	-	-	1e+0	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig19820_at	At5g40700	-	-	3e+0	At5g67420	LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig13143_s_at	At5g40700	-	-	5e+0	At5g38565	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig18659_at	At5g40700	-	-	2e+0	At3g04310	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	HU13K14u_at	At5g40700	-	-	4e-2	At2g30530	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	HV11B04u_x_at	At5g40700	-	-	6e-2	At2g21250	mannose 6-phosphate reductase (NADPH-dependent), putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig15499_at	At5g40700	-	-	3e-1	At1g23950	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig11605_at	At5g40700	-	-	4e-8	At5g47310	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig20206_at	At5g40700	-	-	6e-3	At1g73010	phosphatase	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig17096_at	At5g40700	-	-	7e-2	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig15041_at	At5g40700	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig7902_at	At5g40700	-	-	3e-15	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig6170_at	At5g40700	-	-	1e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig2093_s_at	At5g40700	-	-	3e-88	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig12625_at	At5g40700	-	-	5e-11	At1g09440	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig17597_at	At5g40700	-	-	6e+0	At5g61100	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig13597_at	At5g40700	-	-	2e-28	At3g62910	APG3 (ALBINO AND PALE GREEN)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig17838_at	At5g40700	-	-	5e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig22801_at	At5g40700	-	-	6e-1	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig20885_at	At5g40700	-	-	1e+0	At3g01510	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	HY09B17u_at	At5g40700	-	-	4e+0	At4g01110	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig4515_at	At5g40700	-	-	4e-3	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	HU12E11u_at	At5g40700	-	-	1e+0	At3g01185	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig24303_at	At5g40700	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.09	7.4	HV_CEa0008P09r2_s_at	At5g40700	-	-	1e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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