CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611705_s_at

Gene name
Homology with Arabidopsis Similar to At5g40700: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.69

%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1611705_s_at CF202744.1 - - 1e+1 At5g40700 unknown protein O.I. H.G. S.X.
0.80 93.6 0.96 1620097_x_at CF202968.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.95 1610332_x_at CF204509.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.67 87.9 0.98 1607877_x_at CF202836.1 - - 3e+1 Atcg01250 - O.I. H.G. S.X.
0.50 72.7 0.95 1621501_at CB342916 hypothetical protein LOC100243553 - 1e-3 At1g57820 VIM1 (VARIANT IN METHYLATION 1) O.I. H.G. S.X.
0.47 67.7 0.96 1618679_s_at CB343106 - - 4e-83 Atcg00280 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 96.6 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.43343.2.S1_at, orthologous to the query gene, 1611705_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 89.2 GmaAffx.43343.2.S1_at At5g40700 - - 2e+0 At4g27130 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.27 35.7 Gma.7789.2.S1_s_at At5g40700 - - 1e-101 At4g02890 UBQ14 O.I. H.G. S.X.
0.23 29.9 GmaAffx.91554.1.S1_s_at At5g40700 - - 2e-63 At1g26630 FBR12 (FUMONISIN B1-RESISTANT12) O.I. H.G. S.X.
0.17 21.2 GmaAffx.34785.26.A1_x_at At5g40700 HMG-1-like protein - 9e-4 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) O.I. H.G. S.X.
0.13 16.3 Gma.10800.1.S1_s_at At5g40700 - - 3e-20 At1g15270 - O.I. H.G. S.X.
0.12 15.1 Gma.14281.1.S1_at At5g40700 - - 2e-19 At5g38470 DNA repair protein RAD23, putative O.I. H.G. S.X.
0.10 13.0 Gma.9182.1.S1_at At5g40700 - - 3e-36 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.10 13.0 Gma.2767.1.S1_at At5g40700 - - 8e-1 At1g44094 unknown protein O.I. H.G. S.X.
0.07 10.2 GmaAffx.90190.1.S1_s_at At5g40700 - - 5e-25 At5g46020 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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