Co-expression analysis

Gene ID	1611686_at
Gene name	hypothetical protein LOC100255085
Homology with Arabidopsis	Similar to At5g26080: proline-rich family protein (HF=7e+0)
Module size	6 genes
NF	0.29
%ile	42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	67.7	0.97	1611686_at	CB969423	hypothetical protein LOC100255085	-	7e+0	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1612140_at	CD798360	hypothetical protein LOC100254487	-	1e-17	At1g03250	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1613440_at	CB976741	hypothetical protein LOC100252018	-	4e-10	At1g53450	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1613801_at	CF514247	hypothetical protein LOC100240794	-	1e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1606507_at	CF369116	hypothetical protein LOC100243767	-	4e+0	At5g39520	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1612988_at	CB978708	hypothetical protein LOC100265359	-	6e-29	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage