Co-expression analysis

Gene ID	1611650_at
Gene name	hypothetical protein LOC100244122
Homology with Arabidopsis	Similar to At2g23320: WRKY15 (HF=3e-26)
Module size	6 genes
NF	0.47
%ile	69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.95	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.95	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.95	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1615010_at	CF406012	hypothetical protein LOC100260856	-	8e-3	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1621920_at	CD797740	hypothetical protein LOC100251510	-	8e-3	At1g68490	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage