Co-expression analysis

Gene ID 1611616_at
Gene name hypothetical protein LOC100250213
Homology with ArabidopsisSimilar to At2g30530: unknown protein (HF=8e-12)
Module size 6 genes
NF 0.63
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981611616_atCF406000hypothetical protein LOC100250213-8e-12At2g30530unknown proteinO.I.H.G.S.X.
0.7792.30.981609948_atBQ793462hypothetical protein LOC100259405-3e-1At3g21710unknown proteinO.I.H.G.S.X.
0.6787.90.991609850_atCB979570hypothetical protein LOC100244857-3e-7At1g76510ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.4767.70.981614891_s_atBQ792530hypothetical protein LOC100251643-2e-25At3g56680nucleic acid bindingO.I.H.G.S.X.
0.4666.50.981618634_atCF211062hypothetical protein LOC100248740-5e-1At1g64355unknown proteinO.I.H.G.S.X.
0.3853.60.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.597.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.597.5GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.397.2GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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