Co-expression analysis

Gene ID	1611556_at
Gene name
Homology with Arabidopsis	Similar to At1g76460: RNA recognition motif (RRM)-containing protein (HF=7e+0)
Module size	6 genes
NF	0.12
%ile	20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.95	1611556_at	CB913062	-	-	7e+0	At1g76460	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1611379_at	CF207737	hypothetical protein LOC100242169	-	9e-2	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1608178_s_at	CF210114	hypothetical protein LOC100242383	-	5e-19	At3g43230	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1620490_at	CB971102	hypothetical protein LOC100246112	-	6e-1	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1613297_at	CF205415.1	hypothetical protein LOC100249948	-	2e-24	At4g00600	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.98	1621445_at	CB969553	similar to ftsH-like protease	-	2e-1	At5g50830	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.7	93.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.6	92.5	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.4	91.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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