Co-expression analysis

Gene ID	1611506_x_at
Gene name	hypothetical protein LOC100258503
Homology with Arabidopsis	Similar to At2g02060: transcription factor (HF=4e-3)
Module size	6 genes
NF	0.24
%ile	34.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.94	1611506_x_at	CK136902.1	hypothetical protein LOC100258503	-	4e-3	At2g02060	transcription factor	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1606573_s_at	BQ794579	hypothetical protein LOC100249473	-	3e-6	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1613267_at	CB348234	hypothetical protein LOC100245337	-	1e+0	At4g24805	methyltransferase	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.93	1609079_at	BQ796278	hypothetical protein LOC100247244	-	5e-18	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1617166_s_at	CA808041	ripening-related protein-like	-	4e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1619349_at	CF608419	hypothetical protein LOC100259523	-	1e+0	At4g37720	ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.0	88.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.9	87.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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