Co-expression analysis

Gene ID 1611502_at
Gene name
Homology with ArabidopsisSimilar to At3g14180: transcription factor (HF=7e-14)
Module size 13 genes
NF 0.26
%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.00.961611502_atCB913863--7e-14At3g14180transcription factorO.I.H.G.S.X.
0.4260.10.971622126_atCF568916--7e-8At4g08230glycine-rich proteinO.I.H.G.S.X.
0.2937.70.971618184_atBQ795140hypothetical protein LOC100255523-5e-84At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2734.00.981613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)O.I.H.G.S.X.
0.2734.00.971622571_atCB970577hypothetical protein LOC100255631-3e-11At2g21230bZIP family transcription factorO.I.H.G.S.X.
0.2530.50.971609109_atCB922980hypothetical protein LOC100249946-3e-2At1g05720selenoprotein family proteinO.I.H.G.S.X.
0.2530.50.971615411_s_atBQ799375hypothetical protein LOC100266324-3e-4At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.2327.50.981619248_atCA813733hypothetical protein LOC100264750-3e-1At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.
0.2124.00.981613129_atCB970410hypothetical protein LOC100266068-2e-13At4g17330ATG2484-1O.I.H.G.S.X.
0.2022.40.981620908_atCD013688hypothetical protein LOC100247344-3e-102At4g28880ckl3 (Casein Kinase I-like 3)O.I.H.G.S.X.
0.1718.20.981618197_atBQ797561hypothetical protein LOC100250454-4e-3At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.1515.60.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.1111.30.971611002_s_atCB969717hypothetical protein LOC100246998-6e-13At3g10210-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.189.1GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.189.1GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.189.1GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
1.987.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.987.2GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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