Co-expression analysis

Gene ID	1611481_s_at
Gene name	hypothetical protein LOC100254523
Homology with Arabidopsis	Similar to At3g12490: cysteine protease inhibitor, putative / cystatin, putative (HF=2e+0)
Module size	12 genes
NF	0.36
%ile	53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1611481_s_at	BQ796815	hypothetical protein LOC100254523	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1619901_at	BQ794318	hypothetical protein LOC100258001	-	4e+0	At5g42410	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1606519_at	CB342417	hypothetical protein LOC100261732	-	2e-22	At5g56950	NAP1	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1620143_at	BQ794466	hypothetical protein LOC100248167	-	1e+0	At4g03290	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1617378_at	CB978610	hypothetical protein LOC100265457	-	7e-43	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1609775_at	BQ797173	similar to Os11g0123400	-	8e-18	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1616871_at	CF404278	hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase	-	3e-26	At4g26910	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1613194_at	CF213913	hypothetical protein LOC100258632	-	4e-23	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1620819_at	BQ797308	hypothetical protein LOC100244100	-	1e-135	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1622212_at	BQ798158	hypothetical protein LOC100250769	-	3e-54	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1620593_at	BQ797219	hypothetical protein LOC100252659	-	1e-97	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1616080_at	CF511120	hypothetical protein LOC100254062	-	5e-13	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.1	89.1	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.0	88.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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