Co-expression analysis

Gene ID	1611466_at
Gene name	hypothetical protein LOC100253536
Homology with Arabidopsis	Similar to At4g19100: unknown protein (HF=7e-26)
Module size	6 genes
NF	0.61
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1606604_at	CF373854	hypothetical protein LOC100241081	-	2e-6	At2g39670	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1620736_a_at	CD714912	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1616203_at	CB343761	hypothetical protein LOC100248931	-	1e+0	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1607464_at	CF516938	hypothetical protein LOC100253507	-	3e-30	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1615910_at	BQ792894	hypothetical protein LOC100246602	-	4e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
3.4	95.5	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
3.4	95.5	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
3.1	94.6	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.0	94.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
2.8	93.4	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
2.8	93.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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