CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611440_at

Gene name hypothetical protein LOC100257657
Homology with Arabidopsis Similar to At1g49840: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.37

%ile 54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.96 1611440_at CB978779 hypothetical protein LOC100257657 - 1e-8 At1g49840 unknown protein O.I. H.G. S.X.
0.40 57.7 0.96 1607611_at CF202357.1 - - 3e-8 At3g13224 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.30 39.4 0.96 1620727_at CF202620.1 - - 2e-11 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
0.27 34.0 0.96 1607578_at CF415519 hypothetical protein LOC100247175 - 1e+0 At5g57000 unknown protein O.I. H.G. S.X.
0.27 34.0 0.96 1618230_at CD801769 hypothetical protein LOC100245789 - 2e+0 At4g21090 adrenodoxin-like ferredoxin 1 O.I. H.G. S.X.
0.25 30.5 0.96 1609018_at CF204139.1 - - 1e+0 At3g44580 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.15512.1.S1_at, orthologous to the query gene, 1611440_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 Zm.15512.1.S1_at At1g49840 - - 2e-4 At3g19540 unknown protein O.I. H.G. S.X.
0.61 79.5 Zm.16994.2.A1_a_at At1g49840 methionine synthase - 2e-82 At5g17920 ATMS1 O.I. H.G. S.X.
0.61 79.5 Zm.1551.1.A1_at At1g49840 peptidyl-prolyl cis-trans isomerase 1 - 6e-3 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) O.I. H.G. S.X.
0.56 74.4 Zm.15510.1.A1_at At1g49840 mitochondrial carrier YMR166C - 2e-7 At1g74240 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.44 55.7 Zm.3747.1.S1_at At1g49840 - - 3e-1 At2g42930 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.27 24.6 Zm.8484.1.A1_at At1g49840 hypothetical protein LOC100279952 - 9e-2 At5g42100 ATBG_PAP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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