CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611440_at

Gene name hypothetical protein LOC100257657
Homology with Arabidopsis Similar to At1g49840: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.37

%ile 54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.96 1611440_at CB978779 hypothetical protein LOC100257657 - 1e-8 At1g49840 unknown protein O.I. H.G. S.X.
0.40 57.7 0.96 1607611_at CF202357.1 - - 3e-8 At3g13224 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.30 39.4 0.96 1620727_at CF202620.1 - - 2e-11 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
0.27 34.0 0.96 1607578_at CF415519 hypothetical protein LOC100247175 - 1e+0 At5g57000 unknown protein O.I. H.G. S.X.
0.27 34.0 0.96 1618230_at CD801769 hypothetical protein LOC100245789 - 2e+0 At4g21090 adrenodoxin-like ferredoxin 1 O.I. H.G. S.X.
0.25 30.5 0.96 1609018_at CF204139.1 - - 1e+0 At3g44580 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the rice gene, Os03g0606100, orthologous to the query gene, 1611440_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 Os03g0606100 At1g49840 - Protein of unknown function DUF620 family protein 1e-5 At1g49840 unknown protein O.I. H.G. S.X.
0.50 68.0 Os08g0159800 At1g49840 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 6e-7 At1g32360 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.32 36.3 Os03g0346900 At1g49840 - - 1e-9 At2g47820 unknown protein O.I. H.G. S.X.
0.31 34.5 Os02g0794000 At1g49840 - Conserved hypothetical protein 1e+0 At4g28365 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.18 13.7 Os02g0625900 At1g49840 - Conserved hypothetical protein 4e+0 At5g47130 Bax inhibitor-1 family / BI-1 family O.I. H.G. S.X.
0.09 4.9 Os09g0527500 At1g49840 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At4g39100 SHL1 (short life) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage