Co-expression analysis

Gene ID	1611440_at
Gene name	hypothetical protein LOC100257657
Homology with Arabidopsis	Similar to At1g49840: unknown protein (HF=1e-8)
Module size	6 genes
NF	0.37
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1611440_at	CB978779	hypothetical protein LOC100257657	-	1e-8	At1g49840	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1607611_at	CF202357.1	-	-	3e-8	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1620727_at	CF202620.1	-	-	2e-11	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1607578_at	CF415519	hypothetical protein LOC100247175	-	1e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1618230_at	CD801769	hypothetical protein LOC100245789	-	2e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1609018_at	CF204139.1	-	-	1e+0	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig11223_at, orthologous to the query gene, 1611440_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	Contig11223_at	At1g49840	-	-	3e-3	At1g49840	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig12653_at	At1g49840	-	-	6e-3	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.20	21.1	rbaal31j11_s_at	At1g49840	-	-	1e+0	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig10808_at	At1g49840	-	-	6e+0	At5g18362	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	rbaal38l09_s_at	At1g49840	-	-	1e+0	At5g50423	-	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig11222_at	At1g49840	-	-	6e+0	At2g16020	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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