CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611412_at

Gene name hypothetical protein LOC100244694
Homology with Arabidopsis Similar to At5g37480: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.80

%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.99 1611412_at CF517248 hypothetical protein LOC100244694 - 2e+0 At5g37480 unknown protein O.I. H.G. S.X.
0.83 94.6 0.99 1609191_s_at CB978023 hypothetical protein LOC100258056 - 0 At5g26751 ATSK11 O.I. H.G. S.X.
0.80 93.6 0.99 1606368_s_at CF208516 actin 1 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.80 93.6 0.99 AFFX-Vvi-actin-3_s_at actin 1 - - O.I. H.G. S.X.
0.71 89.5 0.99 AFFX-Vvi-actin-3_c6_s_at actin 1 - - O.I. H.G. S.X.
0.67 87.9 1.00 AFFX-Vvi-actin-3_c2_s_at actin 1 - - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	77.3	0.99	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.
0.83	94.6	0.99	1609191_s_at	CB978023	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	O.I.	H.G.	S.X.
0.80	93.6	0.99	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.80	93.6	0.99	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.
0.71	89.5	0.99	AFFX-Vvi-actin-3_c6_s_at		actin 1	-			-	O.I.	H.G.	S.X.
0.67	87.9	1.00	AFFX-Vvi-actin-3_c2_s_at		actin 1	-			-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.2 89.9 GSM436375 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436417 V. riparia (VR, PI588259) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.2	89.9	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.91563.1.S1_at, orthologous to the query gene, 1611412_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 99.9 TaAffx.91563.1.S1_at At5g37480 - - 7e-2 At4g34850 chalcone and stilbene synthase family protein O.I. H.G. S.X.
0.58 79.2 TaAffx.78382.1.S1_at At5g37480 - - 2e+0 At2g31140 - O.I. H.G. S.X.
0.57 79.2 Ta.25904.2.S1_at At5g37480 - - 2e-1 At4g07940 unknown protein O.I. H.G. S.X.
0.56 78.6 TaAffx.4744.1.S1_at At5g37480 - - 4e+0 At1g04660 glycine-rich protein O.I. H.G. S.X.
0.55 76.8 TaAffx.57685.1.S1_at At5g37480 - - 2e+1 At2g29390 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) O.I. H.G. S.X.
0.54 75.5 TaAffx.117373.1.S1_at At5g37480 - - 1e+0 At3g10400 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.53 74.9 TaAffx.57566.1.S1_at At5g37480 - - 4e+0 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related O.I. H.G. S.X.
0.51 73.0 TaAffx.105451.1.S1_at At5g37480 - - 1e+0 At3g06730 thioredoxin family protein O.I. H.G. S.X.
0.50 72.4 TaAffx.58160.1.S1_at At5g37480 - - 6e+0 At1g61780 postsynaptic protein-related O.I. H.G. S.X.
0.49 69.7 Ta.5079.2.S1_x_at At5g37480 - - 3e-1 At3g16140 PSAH-1 (photosystem I subunit H-1) O.I. H.G. S.X.
0.48 69.0 Ta.8956.1.A1_at At5g37480 - - 3e+0 At3g31350 unknown protein O.I. H.G. S.X.
0.47 67.9 TaAffx.119601.1.S1_at At5g37480 - - 9e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.47 67.9 TaAffx.26250.1.S1_at At5g37480 - - 4e+0 At5g05220 unknown protein O.I. H.G. S.X.
0.46 66.8 TaAffx.113194.1.S1_at At5g37480 - - 6e-2 At2g41530 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) O.I. H.G. S.X.
0.44 64.5 TaAffx.58645.1.S1_at At5g37480 - - 4e+0 At1g67325 binding / zinc ion binding O.I. H.G. S.X.
0.44 64.5 TaAffx.80426.1.S1_at At5g37480 - - 4e-1 At2g12935 unknown protein O.I. H.G. S.X.
0.42 60.9 TaAffx.6386.1.S1_at At5g37480 - - 2e+1 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) O.I. H.G. S.X.
0.40 58.4 Ta.3867.2.S1_x_at At5g37480 - - 2e-5 At4g26850 VTC2 (vitamin c defective 2) O.I. H.G. S.X.
0.39 56.1 TaAffx.98992.1.A1_at At5g37480 - - 8e-2 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) O.I. H.G. S.X.
0.39 56.1 TaAffx.51905.1.S1_at At5g37480 - - 3e+0 At3g25760 AOC1 (ALLENE OXIDE CYCLASE 1) O.I. H.G. S.X.
0.39 56.1 TaAffx.55930.1.S1_at At5g37480 - - 6e+0 At5g63240 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.38 54.7 TaAffx.107179.1.S1_at At5g37480 - - 8e-1 At3g60760 unknown protein O.I. H.G. S.X.
0.38 54.7 TaAffx.23270.2.A1_at At5g37480 - - 2e+1 At5g22608 unknown protein O.I. H.G. S.X.
0.37 53.0 TaAffx.106663.1.S1_at At5g37480 - - 1e+0 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) O.I. H.G. S.X.
0.37 53.0 TaAffx.111613.1.S1_at At5g37480 - - 9e-1 At3g57670 NTT (NO TRANSMITTING TRACT) O.I. H.G. S.X.
0.36 51.9 TaAffx.51594.1.S1_at At5g37480 - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.35 49.8 TaAffx.92350.1.S1_at At5g37480 - - 1e+0 At5g47306 unknown protein O.I. H.G. S.X.
0.35 49.8 TaAffx.39326.1.S1_at At5g37480 - - 5e+0 At5g44170 - O.I. H.G. S.X.
0.34 48.1 TaAffx.122081.2.S1_at At5g37480 - - 3e+0 At5g64800 CLE21 (CLAVATA3/ESR-RELATED 21) O.I. H.G. S.X.
0.34 48.1 TaAffx.26470.1.S1_at At5g37480 - - 4e+0 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.
0.33 46.9 TaAffx.57363.1.S1_at At5g37480 - - 3e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.33 46.9 TaAffx.91595.1.S1_at At5g37480 - - 1e+0 At5g66590 allergen V5/Tpx-1-related family protein O.I. H.G. S.X.
0.32 44.4 Ta.16180.1.A1_at At5g37480 - - 1e+0 At1g03410 2A6 O.I. H.G. S.X.
0.32 44.4 TaAffx.110697.1.S1_at At5g37480 - - 4e+0 At1g47450 unknown protein O.I. H.G. S.X.
0.31 42.7 TaAffx.119081.1.S1_at At5g37480 - - 2e+1 At5g45700 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.28 39.2 TaAffx.121565.1.S1_at At5g37480 - - 1e+0 At4g09530 auxin-responsive family protein O.I. H.G. S.X.
0.27 35.6 TaAffx.64156.1.S1_at At5g37480 - - 4e+0 At5g19830 aminoacyl-tRNA hydrolase O.I. H.G. S.X.
0.27 35.6 TaAffx.107511.1.S1_at At5g37480 - - 2e+1 At5g57980 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) O.I. H.G. S.X.
0.27 35.6 TaAffx.79437.1.S1_at At5g37480 - - 3e+0 At1g02680 TAF13 (TBP-ASSOCIATED FACTOR 13) O.I. H.G. S.X.
0.26 33.6 Ta.25608.2.S1_a_at At5g37480 - - 3e+0 At1g77765 unknown protein O.I. H.G. S.X.
0.26 33.6 Ta.3501.3.A1_at At5g37480 - - 3e-1 At5g08330 TCP family transcription factor, putative O.I. H.G. S.X.
0.25 32.1 Ta.16201.1.S1_at At5g37480 - - 3e+0 At5g57535 unknown protein O.I. H.G. S.X.
0.25 32.1 TaAffx.55475.1.S1_at At5g37480 - - 8e-1 At2g46870 NGA1 (NGATHA1) O.I. H.G. S.X.
0.25 32.1 Ta.3733.1.S1_x_at At5g37480 - - 2e+1 At5g29807 unknown protein O.I. H.G. S.X.
0.20 24.0 Ta.18356.1.S1_at At5g37480 - - 3e+0 At1g48000 MYB112 (myb domain protein 112) O.I. H.G. S.X.
0.19 22.4 Ta.30411.1.S1_at At5g37480 - - 5e+0 At5g62280 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	99.9	TaAffx.91563.1.S1_at	At5g37480	-	-	7e-2	At4g34850	chalcone and stilbene synthase family protein	O.I.	H.G.	S.X.
0.58	79.2	TaAffx.78382.1.S1_at	At5g37480	-	-	2e+0	At2g31140	-	O.I.	H.G.	S.X.
0.57	79.2	Ta.25904.2.S1_at	At5g37480	-	-	2e-1	At4g07940	unknown protein	O.I.	H.G.	S.X.
0.56	78.6	TaAffx.4744.1.S1_at	At5g37480	-	-	4e+0	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.
0.55	76.8	TaAffx.57685.1.S1_at	At5g37480	-	-	2e+1	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	O.I.	H.G.	S.X.
0.54	75.5	TaAffx.117373.1.S1_at	At5g37480	-	-	1e+0	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.53	74.9	TaAffx.57566.1.S1_at	At5g37480	-	-	4e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.
0.51	73.0	TaAffx.105451.1.S1_at	At5g37480	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.
0.50	72.4	TaAffx.58160.1.S1_at	At5g37480	-	-	6e+0	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.
0.49	69.7	Ta.5079.2.S1_x_at	At5g37480	-	-	3e-1	At3g16140	PSAH-1 (photosystem I subunit H-1)	O.I.	H.G.	S.X.
0.48	69.0	Ta.8956.1.A1_at	At5g37480	-	-	3e+0	At3g31350	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	TaAffx.119601.1.S1_at	At5g37480	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.47	67.9	TaAffx.26250.1.S1_at	At5g37480	-	-	4e+0	At5g05220	unknown protein	O.I.	H.G.	S.X.
0.46	66.8	TaAffx.113194.1.S1_at	At5g37480	-	-	6e-2	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.
0.44	64.5	TaAffx.58645.1.S1_at	At5g37480	-	-	4e+0	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.
0.44	64.5	TaAffx.80426.1.S1_at	At5g37480	-	-	4e-1	At2g12935	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	TaAffx.6386.1.S1_at	At5g37480	-	-	2e+1	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.
0.40	58.4	Ta.3867.2.S1_x_at	At5g37480	-	-	2e-5	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.98992.1.A1_at	At5g37480	-	-	8e-2	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.51905.1.S1_at	At5g37480	-	-	3e+0	At3g25760	AOC1 (ALLENE OXIDE CYCLASE 1)	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.55930.1.S1_at	At5g37480	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.107179.1.S1_at	At5g37480	-	-	8e-1	At3g60760	unknown protein	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.23270.2.A1_at	At5g37480	-	-	2e+1	At5g22608	unknown protein	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.106663.1.S1_at	At5g37480	-	-	1e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.111613.1.S1_at	At5g37480	-	-	9e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.
0.36	51.9	TaAffx.51594.1.S1_at	At5g37480	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.
0.35	49.8	TaAffx.92350.1.S1_at	At5g37480	-	-	1e+0	At5g47306	unknown protein	O.I.	H.G.	S.X.
0.35	49.8	TaAffx.39326.1.S1_at	At5g37480	-	-	5e+0	At5g44170	-	O.I.	H.G.	S.X.
0.34	48.1	TaAffx.122081.2.S1_at	At5g37480	-	-	3e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	O.I.	H.G.	S.X.
0.34	48.1	TaAffx.26470.1.S1_at	At5g37480	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.57363.1.S1_at	At5g37480	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.91595.1.S1_at	At5g37480	-	-	1e+0	At5g66590	allergen V5/Tpx-1-related family protein	O.I.	H.G.	S.X.
0.32	44.4	Ta.16180.1.A1_at	At5g37480	-	-	1e+0	At1g03410	2A6	O.I.	H.G.	S.X.
0.32	44.4	TaAffx.110697.1.S1_at	At5g37480	-	-	4e+0	At1g47450	unknown protein	O.I.	H.G.	S.X.
0.31	42.7	TaAffx.119081.1.S1_at	At5g37480	-	-	2e+1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.28	39.2	TaAffx.121565.1.S1_at	At5g37480	-	-	1e+0	At4g09530	auxin-responsive family protein	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.64156.1.S1_at	At5g37480	-	-	4e+0	At5g19830	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.107511.1.S1_at	At5g37480	-	-	2e+1	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.79437.1.S1_at	At5g37480	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.
0.26	33.6	Ta.25608.2.S1_a_at	At5g37480	-	-	3e+0	At1g77765	unknown protein	O.I.	H.G.	S.X.
0.26	33.6	Ta.3501.3.A1_at	At5g37480	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.25	32.1	Ta.16201.1.S1_at	At5g37480	-	-	3e+0	At5g57535	unknown protein	O.I.	H.G.	S.X.
0.25	32.1	TaAffx.55475.1.S1_at	At5g37480	-	-	8e-1	At2g46870	NGA1 (NGATHA1)	O.I.	H.G.	S.X.
0.25	32.1	Ta.3733.1.S1_x_at	At5g37480	-	-	2e+1	At5g29807	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.18356.1.S1_at	At5g37480	-	-	3e+0	At1g48000	MYB112 (myb domain protein 112)	O.I.	H.G.	S.X.
0.19	22.4	Ta.30411.1.S1_at	At5g37480	-	-	5e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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Gene ID	1611412_at
Gene name	hypothetical protein LOC100244694
Homology with Arabidopsis	Similar to At5g37480: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.80
%ile	98.0

Co-expression analysis

Gene ID 1611412_at Gene name hypothetical protein LOC100244694 Homology with ArabidopsisSimilar to At5g37480: unknown protein (HF=2e+0) Module size 6 genes NF 0.80 %ile 98.0

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaZea_mays

Gene ID 1611412_at

Gene name hypothetical protein LOC100244694
Homology with Arabidopsis Similar to At5g37480: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.80

%ile 98.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays