Co-expression analysis

Gene ID 1611412_at
Gene name hypothetical protein LOC100244694
Homology with ArabidopsisSimilar to At5g37480: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.80
%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5577.30.991611412_atCF517248hypothetical protein LOC100244694-2e+0At5g37480unknown proteinO.I.H.G.S.X.
0.8394.60.991609191_s_atCB978023hypothetical protein LOC100258056-0At5g26751ATSK11O.I.H.G.S.X.
0.8093.60.991606368_s_atCF208516actin 1-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.8093.60.99AFFX-Vvi-actin-3_s_atactin 1--O.I.H.G.S.X.
0.7189.50.99AFFX-Vvi-actin-3_c6_s_atactin 1--O.I.H.G.S.X.
0.6787.91.00AFFX-Vvi-actin-3_c2_s_atactin 1--O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.9GSM436375Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436417V. riparia (VR, PI588259) SD, 13h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436415V. riparia (VR, PI588259) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436413V. riparia (VR, PI588259) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.55747.1.A1_at, orthologous to the query gene, 1611412_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8196.1PtpAffx.55747.1.A1_atAt5g37480--2e+0At3g53050galactose-binding lectin family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.134598.1.A1_atAt5g37480hypothetical protein-1e-52At5g28350-O.I.H.G.S.X.
0.3357.5PtpAffx.2009.1.S1_atAt5g37480hypothetical protein-2e-4At2g37890mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2950.5PtpAffx.151520.1.A1_a_atAt5g37480--7e-1At4g00232unknown proteinO.I.H.G.S.X.
0.2950.5Ptp.5336.1.S1_atAt5g37480--6e-3At5g02420unknown proteinO.I.H.G.S.X.
0.2645.2Ptp.2859.1.A1_s_atAt5g37480hypothetical protein-2e+0At5g63330-O.I.H.G.S.X.
0.2645.2Ptp.106.1.S1_atAt5g37480hypothetical protein-4e-23At3g15430regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.2645.2PtpAffx.2892.2.S1_a_atAt5g37480f-box family protein /// hypothetical protein-1e-10At5g57360ZTL (ZEITLUPE)O.I.H.G.S.X.
0.2441.8PtpAffx.22100.1.S1_atAt5g37480hypothetical protein-4e+0At2g30920ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3)O.I.H.G.S.X.
0.2340.5PtpAffx.47019.1.A1_atAt5g37480hypothetical protein-3e+0At1g51870protein kinase family proteinO.I.H.G.S.X.
0.2238.3Ptp.7792.1.S1_atAt5g37480condensin complex components subunit-3e-14At3g54670TTN8 (TITAN8)O.I.H.G.S.X.
0.2238.3PtpAffx.74719.1.A1_atAt5g37480hypothetical protein-5e+0At5g52545unknown proteinO.I.H.G.S.X.
0.2136.5PtpAffx.48609.1.A1_atAt5g37480--3e+0At3g17668ENA (ENHANCER OF ATNSI ACTIVITY)O.I.H.G.S.X.
0.2034.6PtpAffx.114549.1.A1_a_atAt5g37480hypothetical protein-4e-1At5g62650unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.128212.1.A1_atAt5g37480hypothetical protein-5e-2At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.1932.7PtpAffx.26316.1.S1_atAt5g37480chromatin remodeling complex subunit-2e+0At2g20618-O.I.H.G.S.X.
0.1830.8PtpAffx.58798.1.S1_atAt5g37480hypothetical protein-1e-3At3g09100mRNA capping enzyme family proteinO.I.H.G.S.X.
0.1626.9PtpAffx.121714.1.S1_atAt5g37480--2e+1At4g10150zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1626.9PtpAffx.954.1.A1_atAt5g37480hypothetical protein-5e-1At3g16870zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.1626.9PtpAffx.52310.1.S1_atAt5g37480hypothetical protein-2e+0At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.1626.9PtpAffx.23563.1.S1_atAt5g37480hypothetical protein-2e+0At4g11653RALFL29 (RALF-LIKE 29)O.I.H.G.S.X.
0.1525.3PtpAffx.27728.1.S1_atAt5g37480--5e-35At3g14270phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.50850.1.A1_atAt5g37480hypothetical protein-7e-6At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.1118.1Ptp.1150.1.S1_atAt5g37480hypothetical protein-3e-2At5g08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.1118.1PtpAffx.24429.1.S1_atAt5g37480hypothetical protein-6e-1At4g09984LCR34 (Low-molecular-weight cysteine-rich 34)O.I.H.G.S.X.
0.0812.9PtpAffx.57161.1.A1_s_atAt5g37480hypothetical protein-9e-1At3g43490zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.069.8PtpAffx.209988.1.S1_atAt5g37480hypothetical protein-2e+1Atmg00070-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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