Co-expression analysis

Gene ID	1611318_at
Gene name
Homology with Arabidopsis	Similar to At1g53230: TCP3 (HF=1e-9)
Module size	6 genes
NF	0.08
%ile	15.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.94	1611318_at	CB002340	-	-	1e-9	At1g53230	TCP3	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1620789_s_at	CF414942	hypothetical protein LOC100249845	-	8e-1	At5g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1617345_s_at	CF514945	hypothetical protein LOC100247984	-	3e-21	At1g64720	CP5	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.96	1611955_at	CF414616	similar to chloroplast omega-6 fatty acid desaturase	-	4e-54	At4g30950	FAD6 (FATTY ACID DESATURASE 6)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1613991_at	CF510955	hypothetical protein LOC100252545	-	5e-4	At1g67740	PSBY	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1616415_at	CF405075	hypothetical protein LOC100254604	-	3e-4	At5g49030	OVA2 (ovule abortion 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
3.0	94.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.8	93.4	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
2.1	89.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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