Co-expression analysis

Gene ID 1611306_at
Gene name hypothetical protein LOC100245465
Homology with ArabidopsisSimilar to At5g04630: CYP77A9 (HF=2e-6)
Module size 6 genes
NF 0.44
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.90.961611306_atCB972831hypothetical protein LOC100245465-2e-6At5g04630CYP77A9O.I.H.G.S.X.
0.5375.20.971619614_atCF372273hypothetical protein LOC100249831-2e-36At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.5072.70.981613022_s_atCF569215.1hypothetical protein LOC100261985-3e+0At5g28310oxidoreductase-relatedO.I.H.G.S.X.
0.4666.50.961622416_atCF518913hypothetical protein LOC100261985-9e-2At5g01870lipid transfer protein, putativeO.I.H.G.S.X.
0.4464.10.971610279_s_atCF415234hypothetical protein LOC100261504-2e-12At5g19290esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2124.00.971606646_atCA812296hypothetical protein LOC100264115-2e-23At5g09870CESA5 (CELLULOSE SYNTHASE 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.390.7GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.289.9GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.289.9GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.987.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18561.1.A1_at, orthologous to the query gene, 1611306_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.18561.1.A1_atAt5g04630hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.
0.8094.0Zm.1531.1.A1_atAt5g04630hypothetical protein LOC100191913-2e+1At5g54940eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.8094.0ZmAffx.262.1.A1_s_atAt5g04630acidic ribosomal protein P3-3e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.7389.9Zm.13966.2.S1_a_atAt5g04630hypothetical protein LOC100274039-4e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5065.7ZmAffx.507.1.A1_atAt5g04630--2e-1At3g14220GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.2521.3Zm.5707.1.S1_s_atAt5g04630gpm4 protein /// copper chaperone-3e-2At1g66240ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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