CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611306_at

Gene name hypothetical protein LOC100245465
Homology with Arabidopsis Similar to At5g04630: CYP77A9 (HF=2e-6)

Module size 6 genes

NF 0.44

%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.9 0.96 1611306_at CB972831 hypothetical protein LOC100245465 - 2e-6 At5g04630 CYP77A9 O.I. H.G. S.X.
0.53 75.2 0.97 1619614_at CF372273 hypothetical protein LOC100249831 - 2e-36 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) O.I. H.G. S.X.
0.50 72.7 0.98 1613022_s_at CF569215.1 hypothetical protein LOC100261985 - 3e+0 At5g28310 oxidoreductase-related O.I. H.G. S.X.
0.46 66.5 0.96 1622416_at CF518913 hypothetical protein LOC100261985 - 9e-2 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.44 64.1 0.97 1610279_s_at CF415234 hypothetical protein LOC100261504 - 2e-12 At5g19290 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.21 24.0 0.97 1606646_at CA812296 hypothetical protein LOC100264115 - 2e-23 At5g09870 CESA5 (CELLULOSE SYNTHASE 5) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	81.9	0.96	1611306_at	CB972831	hypothetical protein LOC100245465	-	2e-6	At5g04630	CYP77A9	O.I.	H.G.	S.X.
0.53	75.2	0.97	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	O.I.	H.G.	S.X.
0.46	66.5	0.96	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.
0.44	64.1	0.97	1610279_s_at	CF415234	hypothetical protein LOC100261504	-	2e-12	At5g19290	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.21	24.0	0.97	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.3 90.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.2 89.9 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.2 89.9 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.2	94.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.2	89.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9967.2.S1_s_at, orthologous to the query gene, 1611306_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.3 Ta.9967.2.S1_s_at At5g04630 - - 1e-1 At5g04660 CYP77A4 O.I. H.G. S.X.
0.50 72.4 Ta.10088.1.S1_at At5g04630 - - 3e+0 At2g36355 unknown protein O.I. H.G. S.X.
0.49 69.7 Ta.897.1.S1_at At5g04630 - - 1e+0 At3g10670 ATNAP7 O.I. H.G. S.X.
0.47 67.9 TaAffx.79992.1.S1_at At5g04630 - - 2e-1 At4g32270 unknown protein O.I. H.G. S.X.
0.47 67.9 Ta.21001.1.S1_at At5g04630 - - 1e+1 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) O.I. H.G. S.X.
0.45 65.2 AFFX-Tae-r2-Bs-dap-5_at At5g04630 - - O.I. H.G. S.X.
0.45 65.2 TaAffx.19975.1.S1_at At5g04630 - - 9e+0 At1g08220 - O.I. H.G. S.X.
0.44 64.5 Ta.8506.1.S1_x_at At5g04630 - - 3e+0 At4g18280 glycine-rich cell wall protein-related O.I. H.G. S.X.
0.44 64.5 Ta.4487.1.S1_x_at At5g04630 - - 2e-3 At1g35617 unknown protein O.I. H.G. S.X.
0.43 62.2 Ta.12700.1.S1_at At5g04630 MADS box transcription factor - 3e-6 At2g42830 SHP2 (SHATTERPROOF 2) O.I. H.G. S.X.
0.43 62.2 Ta.28494.1.S1_s_at At5g04630 - - 1e+0 At2g44680 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) O.I. H.G. S.X.
0.43 62.2 Ta.13865.1.S1_at At5g04630 MADS box protein - 3e-9 At5g15800 SEP1 (SEPALLATA1) O.I. H.G. S.X.
0.42 60.9 Ta.2441.1.S1_at At5g04630 - - 2e-17 At5g63860 UVR8 (UVB-RESISTANCE 8) O.I. H.G. S.X.
0.42 60.9 Ta.4569.1.S1_at At5g04630 - - 5e+0 At5g38435 SPH8 (S-PROTEIN HOMOLOGUE 8) O.I. H.G. S.X.
0.42 60.9 Ta.254.1.S1_s_at At5g04630 - - 2e-2 At1g01600 CYP86A4 O.I. H.G. S.X.
0.41 59.6 Ta.9525.1.S1_x_at At5g04630 - - 7e-1 At5g59140 SKP1 family protein O.I. H.G. S.X.
0.41 59.6 Ta.8506.1.S1_at At5g04630 - - 3e+0 At4g18280 glycine-rich cell wall protein-related O.I. H.G. S.X.
0.41 59.6 TaAffx.64832.1.S1_at At5g04630 - - 1e-1 At5g43970 TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V) O.I. H.G. S.X.
0.41 59.6 Ta.3305.2.S1_a_at At5g04630 - - 1e-37 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) O.I. H.G. S.X.
0.40 58.4 Ta.5055.1.A1_s_at At5g04630 - - 1e-3 At1g75880 family II extracellular lipase 1 (EXL1) O.I. H.G. S.X.
0.39 56.1 Ta.4352.1.S1_a_at At5g04630 CRC-related protein - 1e-7 At1g69180 CRC (CRABS CLAW) O.I. H.G. S.X.
0.39 56.1 Ta.3361.1.S1_at At5g04630 Salt tolerant protein - 2e+0 At3g49305 - O.I. H.G. S.X.
0.39 56.1 TaAffx.41467.2.S1_at At5g04630 - - 1e-3 At2g28790 osmotin-like protein, putative O.I. H.G. S.X.
0.38 54.7 Ta.3361.1.S1_x_at At5g04630 Salt tolerant protein - 2e+0 At3g49305 - O.I. H.G. S.X.
0.38 54.7 Ta.30752.1.S1_at At5g04630 - - 2e+0 At2g21185 unknown protein O.I. H.G. S.X.
0.38 54.7 Ta.28690.2.S1_x_at At5g04630 - - 4e-2 At3g63310 glutamate binding O.I. H.G. S.X.
0.38 54.7 Ta.3199.1.S1_a_at At5g04630 - - 5e+0 At5g21940 unknown protein O.I. H.G. S.X.
0.37 53.0 TaAffx.19975.2.A1_at At5g04630 - - 3e-1 At5g51400 unknown protein O.I. H.G. S.X.
0.35 49.8 Ta.1953.2.S1_x_at At5g04630 - - 2e-2 At5g07030 aspartic-type endopeptidase O.I. H.G. S.X.
0.34 48.1 Ta.25875.1.S1_x_at At5g04630 - - 2e-1 At2g18196 metal ion binding O.I. H.G. S.X.
0.33 46.9 Ta.1953.3.S1_at At5g04630 - - 3e-4 At5g07030 aspartic-type endopeptidase O.I. H.G. S.X.
0.33 46.9 Ta.3361.2.S1_x_at At5g04630 Salt tolerant protein - 2e+0 At3g49305 - O.I. H.G. S.X.
0.32 44.4 TaAffx.12850.2.S1_x_at At5g04630 - - 4e+0 At2g24400 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) O.I. H.G. S.X.
0.32 44.4 Ta.3361.3.S1_a_at At5g04630 salt tolerant protein - 2e+0 At3g49305 - O.I. H.G. S.X.
0.31 42.7 Ta.9925.1.A1_x_at At5g04630 - - 1e+1 At5g14920 gibberellin-regulated family protein O.I. H.G. S.X.
0.30 40.9 Ta.28320.1.S1_s_at At5g04630 - - 9e+0 At5g19855 unknown protein O.I. H.G. S.X.
0.30 40.9 Ta.20658.1.S1_a_at At5g04630 - - 4e-1 At3g06130 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.29 39.2 Ta.4814.1.A1_at At5g04630 - - 5e-6 At2g10560 unknown protein O.I. H.G. S.X.
0.28 39.2 Ta.12753.1.S1_at At5g04630 - - 5e+0 At1g18130 tRNA synthetase-related / tRNA ligase-related O.I. H.G. S.X.
0.26 33.6 Ta.10964.1.A1_at At5g04630 - - 1e+0 At1g69320 CLE10 (CLAVATA3/ESR-RELATED 10) O.I. H.G. S.X.
0.26 33.6 Ta.29445.1.S1_at At5g04630 - - 3e+0 At3g48660 unknown protein O.I. H.G. S.X.
0.25 32.1 TaAffx.70539.1.A1_at At5g04630 - - 2e-12 At3g14230 RAP2.2 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.3	Ta.9967.2.S1_s_at	At5g04630	-	-	1e-1	At5g04660	CYP77A4	O.I.	H.G.	S.X.
0.50	72.4	Ta.10088.1.S1_at	At5g04630	-	-	3e+0	At2g36355	unknown protein	O.I.	H.G.	S.X.
0.49	69.7	Ta.897.1.S1_at	At5g04630	-	-	1e+0	At3g10670	ATNAP7	O.I.	H.G.	S.X.
0.47	67.9	TaAffx.79992.1.S1_at	At5g04630	-	-	2e-1	At4g32270	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	Ta.21001.1.S1_at	At5g04630	-	-	1e+1	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.
0.45	65.2	AFFX-Tae-r2-Bs-dap-5_at	At5g04630	-	-				O.I.	H.G.	S.X.
0.45	65.2	TaAffx.19975.1.S1_at	At5g04630	-	-	9e+0	At1g08220	-	O.I.	H.G.	S.X.
0.44	64.5	Ta.8506.1.S1_x_at	At5g04630	-	-	3e+0	At4g18280	glycine-rich cell wall protein-related	O.I.	H.G.	S.X.
0.44	64.5	Ta.4487.1.S1_x_at	At5g04630	-	-	2e-3	At1g35617	unknown protein	O.I.	H.G.	S.X.
0.43	62.2	Ta.12700.1.S1_at	At5g04630	MADS box transcription factor	-	3e-6	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.
0.43	62.2	Ta.28494.1.S1_s_at	At5g04630	-	-	1e+0	At2g44680	CKB4 (CASEIN KINASE II BETA SUBUNIT 4)	O.I.	H.G.	S.X.
0.43	62.2	Ta.13865.1.S1_at	At5g04630	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	O.I.	H.G.	S.X.
0.42	60.9	Ta.2441.1.S1_at	At5g04630	-	-	2e-17	At5g63860	UVR8 (UVB-RESISTANCE 8)	O.I.	H.G.	S.X.
0.42	60.9	Ta.4569.1.S1_at	At5g04630	-	-	5e+0	At5g38435	SPH8 (S-PROTEIN HOMOLOGUE 8)	O.I.	H.G.	S.X.
0.42	60.9	Ta.254.1.S1_s_at	At5g04630	-	-	2e-2	At1g01600	CYP86A4	O.I.	H.G.	S.X.
0.41	59.6	Ta.9525.1.S1_x_at	At5g04630	-	-	7e-1	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.
0.41	59.6	Ta.8506.1.S1_at	At5g04630	-	-	3e+0	At4g18280	glycine-rich cell wall protein-related	O.I.	H.G.	S.X.
0.41	59.6	TaAffx.64832.1.S1_at	At5g04630	-	-	1e-1	At5g43970	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	O.I.	H.G.	S.X.
0.41	59.6	Ta.3305.2.S1_a_at	At5g04630	-	-	1e-37	At5g62670	AHA11 (Arabidopsis H(+)-ATPase 11)	O.I.	H.G.	S.X.
0.40	58.4	Ta.5055.1.A1_s_at	At5g04630	-	-	1e-3	At1g75880	family II extracellular lipase 1 (EXL1)	O.I.	H.G.	S.X.
0.39	56.1	Ta.4352.1.S1_a_at	At5g04630	CRC-related protein	-	1e-7	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.
0.39	56.1	Ta.3361.1.S1_at	At5g04630	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.41467.2.S1_at	At5g04630	-	-	1e-3	At2g28790	osmotin-like protein, putative	O.I.	H.G.	S.X.
0.38	54.7	Ta.3361.1.S1_x_at	At5g04630	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.
0.38	54.7	Ta.30752.1.S1_at	At5g04630	-	-	2e+0	At2g21185	unknown protein	O.I.	H.G.	S.X.
0.38	54.7	Ta.28690.2.S1_x_at	At5g04630	-	-	4e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.
0.38	54.7	Ta.3199.1.S1_a_at	At5g04630	-	-	5e+0	At5g21940	unknown protein	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.19975.2.A1_at	At5g04630	-	-	3e-1	At5g51400	unknown protein	O.I.	H.G.	S.X.
0.35	49.8	Ta.1953.2.S1_x_at	At5g04630	-	-	2e-2	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.
0.34	48.1	Ta.25875.1.S1_x_at	At5g04630	-	-	2e-1	At2g18196	metal ion binding	O.I.	H.G.	S.X.
0.33	46.9	Ta.1953.3.S1_at	At5g04630	-	-	3e-4	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.
0.33	46.9	Ta.3361.2.S1_x_at	At5g04630	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.
0.32	44.4	TaAffx.12850.2.S1_x_at	At5g04630	-	-	4e+0	At2g24400	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	O.I.	H.G.	S.X.
0.32	44.4	Ta.3361.3.S1_a_at	At5g04630	salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.
0.31	42.7	Ta.9925.1.A1_x_at	At5g04630	-	-	1e+1	At5g14920	gibberellin-regulated family protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.28320.1.S1_s_at	At5g04630	-	-	9e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.20658.1.S1_a_at	At5g04630	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.29	39.2	Ta.4814.1.A1_at	At5g04630	-	-	5e-6	At2g10560	unknown protein	O.I.	H.G.	S.X.
0.28	39.2	Ta.12753.1.S1_at	At5g04630	-	-	5e+0	At1g18130	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.
0.26	33.6	Ta.10964.1.A1_at	At5g04630	-	-	1e+0	At1g69320	CLE10 (CLAVATA3/ESR-RELATED 10)	O.I.	H.G.	S.X.
0.26	33.6	Ta.29445.1.S1_at	At5g04630	-	-	3e+0	At3g48660	unknown protein	O.I.	H.G.	S.X.
0.25	32.1	TaAffx.70539.1.A1_at	At5g04630	-	-	2e-12	At3g14230	RAP2.2	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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Gene ID	1611306_at
Gene name	hypothetical protein LOC100245465
Homology with Arabidopsis	Similar to At5g04630: CYP77A9 (HF=2e-6)
Module size	6 genes
NF	0.44
%ile	65.3

Co-expression analysis

Gene ID 1611306_at Gene name hypothetical protein LOC100245465 Homology with ArabidopsisSimilar to At5g04630: CYP77A9 (HF=2e-6) Module size 6 genes NF 0.44 %ile 65.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaZea_mays

Gene ID 1611306_at

Gene name hypothetical protein LOC100245465
Homology with Arabidopsis Similar to At5g04630: CYP77A9 (HF=2e-6)

Module size 6 genes

NF 0.44

%ile 65.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays