Co-expression analysis

Gene ID	1611306_at
Gene name	hypothetical protein LOC100245465
Homology with Arabidopsis	Similar to At5g04630: CYP77A9 (HF=2e-6)
Module size	6 genes
NF	0.44
%ile	65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.96	1611306_at	CB972831	hypothetical protein LOC100245465	-	2e-6	At5g04630	CYP77A9	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1610279_s_at	CF415234	hypothetical protein LOC100261504	-	2e-12	At5g19290	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.2	89.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

Inter-species module comparison

A co-expression module including the barley gene, Contig15560_at, orthologous to the query gene, 1611306_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig15560_at	At5g04630	-	-	3e-3	At3g52970	CYP76G1	O.I.	H.G.	S.X.	Please select
0.73	88.7	HV_CEb0015L05r2_at	At5g04630	-	-	3e-4	At5g48790	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	HV_CEb0015K08r2_at	At5g04630	-	-	5e+0	At3g48840	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig12194_at	At5g04630	-	-	5e-7	At1g06050	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig12981_at	At5g04630	-	-	1e-1	At5g60960	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig12191_s_at	At5g04630	-	-	7e-5	At5g58390	peroxidase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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