Co-expression analysis

Gene ID 1611306_at
Gene name hypothetical protein LOC100245465
Homology with ArabidopsisSimilar to At5g04630: CYP77A9 (HF=2e-6)
Module size 6 genes
NF 0.44
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.90.961611306_atCB972831hypothetical protein LOC100245465-2e-6At5g04630CYP77A9O.I.H.G.S.X.
0.5375.20.971619614_atCF372273hypothetical protein LOC100249831-2e-36At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.5072.70.981613022_s_atCF569215.1hypothetical protein LOC100261985-3e+0At5g28310oxidoreductase-relatedO.I.H.G.S.X.
0.4666.50.961622416_atCF518913hypothetical protein LOC100261985-9e-2At5g01870lipid transfer protein, putativeO.I.H.G.S.X.
0.4464.10.971610279_s_atCF415234hypothetical protein LOC100261504-2e-12At5g19290esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2124.00.971606646_atCA812296hypothetical protein LOC100264115-2e-23At5g09870CESA5 (CELLULOSE SYNTHASE 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.390.7GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.289.9GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.289.9GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.987.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g04630, orthologous to the query gene, 1611306_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7687.4At5g04630830340CYP77A9member of CYP77AO.I.H.G.S.X.
0.9797.6At1g23270838936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.H.G.S.X.
0.9797.6At2g38510818433MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.H.G.S.X.
0.9797.6At3g06230819797ATMKK8member of MAP Kinase KinaseO.I.H.G.S.X.
0.9797.6At3g42990823355unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9797.6At3g57210824888-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9797.6At5g04640830341AGL99 (AGAMOUS-LIKE 99)F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOBO.I.H.G.S.X.
0.9797.6At5g36190833616-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9797.6At5g43220---O.I.H.G.S.X.
0.9797.6At5g53690835450unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At1g13760837936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9597.0At2g166803768265transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9597.0At2g19700816489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9597.0At3g43500823436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At4g160203769881--O.I.H.G.S.X.
0.9597.0At5g41490834150F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.9597.0At5g50880835160unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9396.4At2g30380817588-F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFO.I.H.G.S.X.
0.9396.4At5g29210833050unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.8693.1At1g370573767056transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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