Co-expression analysis

Gene ID	1611264_at
Gene name
Homology with Arabidopsis	Similar to At5g14740: CA2 (CARBONIC ANHYDRASE 2) (HF=1e-3)
Module size	42 genes
NF	0.25
%ile	35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.87	1611264_at	CF414855	-	-	1e-3	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.93	1619453_s_at	CB346324	hypothetical protein LOC100260419	-	1e-1	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.91	1607717_at	CF511303	-	-	7e-2	At1g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.93	1614532_at	CF211128	hypothetical protein LOC100263733	-	4e-1	At3g17040	HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1606926_at	CA812201	hypothetical protein LOC100249085	-	1e-1	At4g32915	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1619072_at	CF605045	-	-	1e-42	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607579_at	CF210458	hypothetical protein LOC100250450	-	1e-24	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1621872_s_at	CB005621	hypothetical protein LOC100265707	-	2e-7	At1g74840	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1621113_at	CF210338	hypothetical protein LOC100254691	-	4e+0	At2g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1610664_s_at	CF213279	hypothetical protein LOC100259928	-	5e+0	At5g18661	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.93	1617236_at	CD006619	hypothetical protein LOC100243255	-	7e-40	At1g79510	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.92	1606672_at	CB005450	-	-	2e+0	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.91	1621489_at	BQ800164	hypothetical protein LOC100257577	-	4e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1611124_at	CA818028	similar to Probable pyridoxal biosynthesis protein PDX1	-	5e-60	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.94	1607332_at	BQ797091	hypothetical protein LOC100265577	-	6e-81	At3g47060	ftsh7 (FtsH protease 7)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1622660_at	CF516479	hypothetical protein LOC100266599	-	2e-68	At4g04770	ATABC1 (ATP BINDING CASSETTE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1608848_at	CD715853	-	-	1e+1	At5g36910	THI2.2 (THIONIN 2.2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1607313_s_at	CB340858	glutamine synthetase	-	2e-9	At5g16570	GLN1	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1606627_at	BQ792075	hypothetical protein LOC100267589	-	4e+0	At4g21850	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.96	1620226_at	CF372108	hypothetical protein LOC100254018	-	2e-24	At4g33460	ATNAP13	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1618718_at	BQ792420	hypothetical protein LOC100264252	-	3e-4	At2g35490	plastid-lipid associated protein PAP, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1611423_s_at	CB916855	hypothetical protein LOC100254781	-	4e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.91	1615830_at	CA816489	hypothetical protein LOC100247422	-	1e-21	At1g18180	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1615946_s_at	CB001399	hypothetical protein LOC100256891	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.93	1617168_at	CD004171	hypothetical protein LOC100265657	-	2e+0	At5g40847	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1611610_at	CA818638	hypothetical protein LOC100246037	-	8e-22	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1610585_at	CF404844	hypothetical protein LOC100244105	-	1e+0	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1616440_at	CD798130	hypothetical protein LOC100240863	-	4e-3	At5g03900	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1608777_at	CB344861	hypothetical protein LOC100266496	-	6e-19	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1617027_at	CA809263	hypothetical protein LOC100258375	-	1e-1	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1609724_at	CF210650	hypothetical protein LOC100255332	-	1e-4	At3g56010	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1615369_at	CB918327	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.95	1616676_at	CA817652	hypothetical protein LOC100266683	-	8e+0	At5g43518	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.92	1619887_at	CB976758	hypothetical protein LOC100255748	-	4e-10	At1g19740	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.91	1611901_s_at	CF517137	hypothetical protein LOC100253335	-	4e-11	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1611394_at	BQ794749	hypothetical protein LOC100241599	-	7e-5	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1610306_at	CD711319	hypothetical protein LOC100241968	-	5e-3	At3g42565	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.95	1615927_s_at	CB972155	hypothetical protein LOC100249080	-	3e-2	At1g60950	FED A	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.93	1608833_at	CB339918	hypothetical protein LOC100256225	-	6e-44	At3g17430	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.92	1622401_at	CF403548	-	-	3e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.5	81.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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