Co-expression analysis

Gene ID	1611250_at
Gene name	hypothetical protein LOC100249628
Homology with Arabidopsis	Similar to At4g24100: protein kinase family protein (HF=9e-4)
Module size	6 genes
NF	0.37
%ile	54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.98	1611250_at	CB922487	hypothetical protein LOC100249628	-	9e-4	At4g24100	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1607385_at	BQ800060	hypothetical protein LOC100264523	-	2e-15	At1g27190	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1612309_at	CB342376	hypothetical protein LOC100245361 /// hypothetical protein LOC100263480	-	7e-2	At2g37195	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1620908_at	CD013688	hypothetical protein LOC100247344	-	3e-102	At4g28880	ckl3 (Casein Kinase I-like 3)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1606773_at	CF208569	hypothetical protein LOC100243052	-	1e-18	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1611958_at	BQ800100	hypothetical protein LOC100265795	-	8e-18	At5g66930	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.5	91.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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