Co-expression analysis

Gene ID	1611238_at
Gene name	hypothetical protein LOC100263239
Homology with Arabidopsis	Similar to At1g65230: unknown protein (HF=5e-6)
Module size	14 genes
NF	0.59
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.97	1611238_at	CD799234	hypothetical protein LOC100263239	-	5e-6	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.98	1622065_at	CD801714	hypothetical protein LOC100240924	-	1e-27	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.98	1606585_at	CB339560	hypothetical protein LOC100250401	-	3e-27	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.99	1620292_at	CA817018	hypothetical protein LOC100264686	-	3e-1	At2g45434	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.98	1617428_at	CB344473	hypothetical protein LOC100259814	-	7e-57	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.98	1612645_at	CB344170	hypothetical protein LOC100251062	-	2e-6	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.98	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1609310_at	CB342641	hypothetical protein LOC100249576	-	2e-177	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.98	1611476_at	CB342522	hypothetical protein LOC100248815	-	1e-16	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1618670_at	BQ798857	hypothetical protein LOC100264831	-	2e-14	At5g27560	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1613102_s_at	CA809430	hypothetical protein LOC100244092	-	6e-91	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1617901_s_at	CA817757	hypothetical protein LOC100259229	-	6e-18	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613991_at	CF510955	hypothetical protein LOC100252545	-	5e-4	At1g67740	PSBY	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1614409_at	CA817387	hypothetical protein LOC100266036	-	1e-72	At3g61470	LHCA2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.4	91.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.3	90.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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