CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611218_at

Gene name hypothetical LOC100261590
Homology with Arabidopsis Similar to At1g66360: C2 domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.30

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.3 0.97 1611218_at CB912267 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.50 72.7 0.97 1611997_at CA812801 hypothetical protein LOC100249691 - 4e-2 At5g55660 - O.I. H.G. S.X.
0.40 57.7 0.97 1612900_at CD797784 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein O.I. H.G. S.X.
0.19 20.9 0.97 1618098_at CB979528 hypothetical protein LOC100244989 - 8e-1 At5g63135 unknown protein O.I. H.G. S.X.
0.17 18.2 0.97 1619095_s_at CB341757 hypothetical protein LOC100257742 - 8e-8 At5g63280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 18.2 0.97 1612717_s_at CA814430 hypothetical protein LOC100259033 - 1e+0 At1g01225 NC domain-containing protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.3	0.97	1611218_at	CB912267	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.
0.50	72.7	0.97	1611997_at	CA812801	hypothetical protein LOC100249691	-	4e-2	At5g55660	-	O.I.	H.G.	S.X.
0.40	57.7	0.97	1612900_at	CD797784	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.
0.19	20.9	0.97	1618098_at	CB979528	hypothetical protein LOC100244989	-	8e-1	At5g63135	unknown protein	O.I.	H.G.	S.X.
0.17	18.2	0.97	1619095_s_at	CB341757	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.17	18.2	0.97	1612717_s_at	CA814430	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	72.7	0.93	1620918_at	CF404886	hypothetical protein LOC100252094	-	3e-1	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.46	66.5	0.94	1613848_at	CF568786	-	-	4e-9	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.
0.46	66.5	0.96	1611443_at	CA818502	-	-	9e-1	At1g77885	unknown protein	O.I.	H.G.	S.X.
0.46	66.5	0.96	1618109_at	CB971579	-	-	2e-11	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.
0.44	64.1	0.95	1620984_at	CB975678	-	-	4e+0	At1g44094	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.97	1621019_at	CF201902.1	-	-	1e+0	At5g65360	histone H3	O.I.	H.G.	S.X.
0.40	57.7	0.94	1609731_at	CA815182	-	-	2e-1	At2g22426	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.94	1621386_at	CF510917	-	-	2e+0	At2g06667	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.94	1622881_x_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.
0.40	57.7	0.95	1609929_at	CB346194	hypothetical protein LOC100259947	-	3e+0	At5g02440	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.95	1611417_at	CF203238.1	-	-	3e-2	At1g30795	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.38	53.6	0.96	1617520_at	CF512466	hypothetical LOC100266987	-	3e-1	At3g27570	-	O.I.	H.G.	S.X.
0.38	53.6	0.94	1612545_at	CB007109	-	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.
0.36	50.7	0.93	1609037_at	CB342383	-	-	4e-3	At5g08350	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.
0.36	50.7	0.95	1617373_s_at	CA816697	hypothetical protein LOC100245878	-	5e-6	At5g23570	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	O.I.	H.G.	S.X.
0.36	50.7	0.95	1611907_at	CF209622	-	-	4e+0	At5g06570	hydrolase	O.I.	H.G.	S.X.
0.36	50.7	0.95	1610231_at	CF200895.1	-	-	7e-2	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	50.7	0.96	1616306_at	CF608736	-	-	1e+0	At2g01200	IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)	O.I.	H.G.	S.X.
0.36	50.7	0.97	1617258_at	CF516015	hypothetical protein LOC100245053	-	4e+0	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.
0.35	48.5	0.93	1616537_at	CF212796	hypothetical protein LOC100244754	-	3e-1	At3g45020	50S ribosomal protein-related	O.I.	H.G.	S.X.
0.33	45.7	0.93	1616228_at	CD717999	-	-	2e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.93	1611068_at	CF210610	hypothetical protein LOC100263559	-	5e-10	At1g67140	SWEETIE (SWEETIE)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1613380_at	CF516797	-	-	4e+0	At3g56290	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.96	1612097_at	CB348571	-	-	6e-5	At4g23400	PIP1	O.I.	H.G.	S.X.
0.33	45.7	0.96	1612087_at	CB339591	-	-	2e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.98	1615091_at	CD801426	hypothetical protein LOC100242289	-	2e-2	At1g13770	-	O.I.	H.G.	S.X.
0.31	41.3	0.94	1618454_at	BQ797476	-	-	3e-1	At3g63330	protein kinase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1614499_at	CF205866.1	-	-	5e-1	At3g04730	IAA16	O.I.	H.G.	S.X.
0.30	39.4	0.94	1616849_at	CA809090	-	-	4e+0	At5g23470	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.29	37.7	0.93	1622036_at	CB983151	-	-	6e+0	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.
0.29	37.7	0.94	1612538_at	CB975523	-	-	3e-4	At2g25737	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1606581_at	CF210843	-	-	3e-13	At5g12350	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.
0.29	37.7	0.96	1615875_at	CB981816	hypothetical protein LOC100262865	-	6e-2	At3g01516	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.96	1618559_at	CF515423	hypothetical protein LOC100243779	-	2e-5	At1g44910	protein binding	O.I.	H.G.	S.X.
0.29	37.7	0.96	1620961_x_at	CF202159.1	-	-	3e-4	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.
0.29	37.7	0.97	1611253_at	CD798640	-	-	2e-1	At1g75060	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1620387_at	CD719602	hypothetical protein LOC100260954	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.
0.29	37.7	0.97	1610826_at	CF214236	hypothetical protein LOC100265882	-	1e-6	At1g05205	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1609114_at	CF201212.1	-	-	3e+0	At5g39581	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.96	1616040_at	CF513277	-	-	6e+0	At1g57850	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.
0.26	32.0	0.93	1611470_at	CA809540	-	-	2e-1	At5g38440	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.25	30.5	0.96	1611427_x_at	CF202711.1	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.25	30.5	0.96	1622827_at	CF213249	hypothetical protein LOC100245850	-	3e+0	At2g41470	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 98.4 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.9 97.9 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.8 97.8 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.5 95.7 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.5	98.4	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
4.9	97.9	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
4.8	97.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.5	95.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1611218_at
Gene name	hypothetical LOC100261590
Homology with Arabidopsis	Similar to At1g66360: C2 domain-containing protein (HF=3e-1)
Module size	6 genes
NF	0.30
%ile	43.7

Co-expression analysis

Gene ID 1611218_at Gene name hypothetical LOC100261590 Homology with ArabidopsisSimilar to At1g66360: C2 domain-containing protein (HF=3e-1) Module size 6 genes NF 0.30 %ile 43.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1611218_at

Gene name hypothetical LOC100261590
Homology with Arabidopsis Similar to At1g66360: C2 domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.30

%ile 43.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays