Co-expression analysis

Gene ID	1611218_at
Gene name	hypothetical LOC100261590
Homology with Arabidopsis	Similar to At1g66360: C2 domain-containing protein (HF=3e-1)
Module size	6 genes
NF	0.30
%ile	43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.97	1611218_at	CB912267	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1611997_at	CA812801	hypothetical protein LOC100249691	-	4e-2	At5g55660	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1612900_at	CD797784	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1618098_at	CB979528	hypothetical protein LOC100244989	-	8e-1	At5g63135	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1619095_s_at	CB341757	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1612717_s_at	CA814430	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
4.9	97.9	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
4.8	97.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.5	95.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.54.1.A1_at, orthologous to the query gene, 1611218_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	ZmAffx.54.1.A1_at	At1g66360	-	-	5e-2	At3g20610	non-race specific disease resistance protein, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.6991.1.A1_at	At1g66360	ribosomal protein L35 containing protein	-	7e+0	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	ZmAffx.800.1.S1_at	At1g66360	hypothetical protein LOC100279626	-	2e-4	At3g58580	hydrolase	O.I.	H.G.	S.X.	Please select
0.67	85.8		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	ZmAffx.82.1.S1_at	At1g66360	-	-	5e-2	At4g11910	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.17117.1.A1_at	At1g66360	hypothetical protein LOC100191770	-	2e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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