CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611218_at

Gene name hypothetical LOC100261590
Homology with Arabidopsis Similar to At1g66360: C2 domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.30

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.3 0.97 1611218_at CB912267 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.50 72.7 0.97 1611997_at CA812801 hypothetical protein LOC100249691 - 4e-2 At5g55660 - O.I. H.G. S.X.
0.40 57.7 0.97 1612900_at CD797784 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein O.I. H.G. S.X.
0.19 20.9 0.97 1618098_at CB979528 hypothetical protein LOC100244989 - 8e-1 At5g63135 unknown protein O.I. H.G. S.X.
0.17 18.2 0.97 1619095_s_at CB341757 hypothetical protein LOC100257742 - 8e-8 At5g63280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 18.2 0.97 1612717_s_at CA814430 hypothetical protein LOC100259033 - 1e+0 At1g01225 NC domain-containing protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 98.4 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.9 97.9 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.8 97.8 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.5 95.7 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5541.3.S1_at, orthologous to the query gene, 1611218_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.8 Ta.5541.3.S1_at At1g66360 - - 4e+0 At4g27530 unknown protein O.I. H.G. S.X.
0.43 62.2 TaAffx.70983.1.S1_at At1g66360 - - 3e+0 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) O.I. H.G. S.X.
0.38 54.7 Ta.24161.1.A1_at At1g66360 - - 4e-5 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) O.I. H.G. S.X.
0.29 39.2 Ta.7107.1.A1_at At1g66360 - - 1e+0 At4g17160 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) O.I. H.G. S.X.
0.13 14.6 Ta.5417.1.S1_s_at At1g66360 - - 1e+1 At5g48640 cyclin family protein O.I. H.G. S.X.
0.12 13.3 Ta.19876.1.S1_at At1g66360 - - 2e-3 At5g05570 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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