CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611218_at

Gene name hypothetical LOC100261590
Homology with Arabidopsis Similar to At1g66360: C2 domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.30

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.3 0.97 1611218_at CB912267 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.50 72.7 0.97 1611997_at CA812801 hypothetical protein LOC100249691 - 4e-2 At5g55660 - O.I. H.G. S.X.
0.40 57.7 0.97 1612900_at CD797784 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein O.I. H.G. S.X.
0.19 20.9 0.97 1618098_at CB979528 hypothetical protein LOC100244989 - 8e-1 At5g63135 unknown protein O.I. H.G. S.X.
0.17 18.2 0.97 1619095_s_at CB341757 hypothetical protein LOC100257742 - 8e-8 At5g63280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 18.2 0.97 1612717_s_at CA814430 hypothetical protein LOC100259033 - 1e+0 At1g01225 NC domain-containing protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 98.4 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.9 97.9 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.8 97.8 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.5 95.7 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig9348_at, orthologous to the query gene, 1611218_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.39 50.5 Contig9348_at At1g66360 - - 2e-5 At1g02080 transcriptional regulator-related O.I. H.G. S.X.
0.60 77.3 Contig17881_at At1g66360 - - 4e-1 At4g17580 Bax inhibitor-1 family protein / BI-1 family protein O.I. H.G. S.X.
0.44 58.9 HA05b17r_at At1g66360 - - 3e-13 At1g09210 calreticulin 2 (CRT2) O.I. H.G. S.X.
0.43 56.4 Contig4305_s_at At1g66360 - - 5e+0 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) O.I. H.G. S.X.
0.40 53.1 HU06E17r_at At1g66360 - - 2e-3 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.25 28.9 HVSMEb0017O13f_at At1g66360 - - 5e-1 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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