Co-expression analysis

Gene ID	1611216_at
Gene name	hypothetical protein LOC100262087
Homology with Arabidopsis	Similar to At1g16180: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=4e-126)
Module size	6 genes
NF	0.48
%ile	72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.98	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1614627_at	CF518499	hypothetical protein LOC100247379	-	1e-1	At4g31130	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607439_at	CF512630	hypothetical protein LOC100262218	-	9e-18	At1g60170	emb1220 (embryo defective 1220)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1613287_at	BQ795475	-	-	1e-2	At1g76450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1620631_at	CB339382	hypothetical protein LOC100255601	-	1e-63	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1619333_at	CF201109.1	hypothetical protein LOC100245238	-	3e-51	At1g03910	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.4	97.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.0	96.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.5	95.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.5	95.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.5	95.7	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
3.4	95.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
3.3	95.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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