Co-expression analysis

Gene ID	1611211_at
Gene name	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
Homology with Arabidopsis	Similar to At1g22410: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (HF=3e-10)
Module size	6 genes
NF	0.40
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.93	1611211_at	CF603196	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-10	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1621405_at	CF517917	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	3e-4	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1616944_at	CF211395	hypothetical protein LOC100261951	-	1e-1	At5g65400	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
9.2	99.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.4	98.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1906.1.S1_at, orthologous to the query gene, 1611211_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.35	49.8	Ta.1906.1.S1_at	At1g22410	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	O.I.	H.G.	S.X.	Please select
0.82	92.7	Ta.12561.1.S1_x_at	At1g22410	-	-	3e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	91.1	Ta.12561.3.S1_x_at	At1g22410	-	-	3e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.4385.2.A1_at	At1g22410	-	-	7e-1	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.12561.2.S1_x_at	At1g22410	-	-	4e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.4385.2.A1_x_at	At1g22410	-	-	7e-1	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.25563.1.S1_at	At1g22410	-	-	3e-12	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.22823.1.S1_at	At1g22410	-	-	4e-9	At2g41770	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.6466.1.S1_at	At1g22410	-	-	1e-29	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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