Co-expression analysis

Gene ID	1611211_at
Gene name	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
Homology with Arabidopsis	Similar to At1g22410: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (HF=3e-10)
Module size	6 genes
NF	0.40
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.93	1611211_at	CF603196	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-10	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1621405_at	CF517917	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	3e-4	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1616944_at	CF211395	hypothetical protein LOC100261951	-	1e-1	At5g65400	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
9.2	99.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.4	98.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71055.1.S1_at, orthologous to the query gene, 1611211_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	GmaAffx.71055.1.S1_at	At1g22410	-	-	4e+0	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.5590.1.S1_a_at	At1g22410	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.4360.1.S1_s_at	At1g22410	-	-	3e-28	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.90530.1.S1_s_at	At1g22410	-	-	1e-12	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.5590.1.S1_at	At1g22410	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.90764.1.S1_at	At1g22410	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.90764.1.S1_s_at	At1g22410	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.86773.2.S1_at	At1g22410	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.15492.1.S1_s_at	At1g22410	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage