Co-expression analysis

Gene ID	1611210_at
Gene name
Homology with Arabidopsis	Similar to At5g09250: KIWI (HF=3e-1)
Module size	6 genes
NF	0.02
%ile	4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.77	1611210_at	CD009361	-	-	3e-1	At5g09250	KIWI	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.94	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.96	1612117_at	CF212666	hypothetical protein LOC100258476	-	2e-33	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.95	1615235_at	CD717990	hypothetical protein LOC100262830	-	1e-16	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1619711_at	CF211123	hypothetical protein LOC100248740	-	3e-1	At3g48940	remorin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	99.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.6	98.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
3.0	94.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.79307.1.S1_at, orthologous to the query gene, 1611210_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.79307.1.S1_at	At5g09250	-	-	3e+0	At1g64355	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.58161.1.S1_at	At5g09250	-	-	3e+0	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.15707.1.A1_at	At5g09250	-	-	1e+1	At1g25400	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.34241.2.S1_at	At5g09250	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.34241.2.S1_x_at	At5g09250	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.00	0.7	Ta.5674.1.S1_at	At5g09250	-	-	3e+0	At4g30690	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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