Co-expression analysis

Gene ID	1611197_at
Gene name	hypothetical protein LOC100259765
Homology with Arabidopsis	Similar to At1g78895: - (HF=4e-16)
Module size	6 genes
NF	0.17
%ile	25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1611197_at	CA812412	hypothetical protein LOC100259765	-	4e-16	At1g78895	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1612000_at	CB342454	hypothetical protein LOC100260307	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1614534_at	CF603286	hypothetical protein LOC100253600	-	3e-38	At4g15080	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1621964_at	CF207985	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1615154_at	CF209662	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
3.5	95.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.7	93.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.4	91.3	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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