Co-expression analysis

Gene ID	1611177_at
Gene name	hypothetical protein LOC100263874
Homology with Arabidopsis	Similar to At1g60200: splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (HF=2e-8)
Module size	6 genes
NF	0.48
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1611177_at	CF518669	hypothetical protein LOC100263874	-	2e-8	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1617445_s_at	CF517231	similar to Hsp70 interacting protein/thioredoxin chimera	-	1e+0	At1g31020	ATO2 (Arabidopsis thioredoxin o2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1614010_at	CF518977	hypothetical LOC100246762	-	4e+0	At1g60390	BURP domain-containing protein / polygalacturonase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1612148_at	CB976186	hypothetical protein LOC100252593	-	1e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1609735_at	CF372575	hypothetical protein LOC100249713	-	1e-75	At1g50030	TOR (TARGET OF RAPAMYCIN)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.5	91.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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