Co-expression analysis

Gene ID 1611092_at
Gene name
Homology with ArabidopsisSimilar to At3g51890: protein binding / structural molecule (HF=3e-1)
Module size 6 genes
NF 0.15
%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5375.20.941611092_atCF208653--3e-1At3g51890protein binding / structural moleculeO.I.H.G.S.X.
0.4464.10.941611089_atCF518359hypothetical protein LOC100245763 /// hypothetical protein LOC100250595-1e+0At5g49665zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2937.70.951610473_atCD008037hypothetical protein LOC100259805-3e-1At3g10980unknown proteinO.I.H.G.S.X.
0.2225.60.941621827_atCF373383similar to flowering locus C-like MADS-box protein-4e-11At2g45650AGL6 (AGAMOUS-LIKE 6)O.I.H.G.S.X.
0.1010.30.951619464_atCA818609hypothetical protein LOC100254564-3e-11At1g79160unknown proteinO.I.H.G.S.X.
0.066.80.951621556_s_atCB980317hypothetical protein LOC100246330 /// hypothetical protein LOC100266521-2e-4At2g22430ATHB6O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.70.971609974_atCB977877hypothetical protein LOC100267017-2e-61At4g26610D6PKL1 (D6 PROTEIN KINASE LIKE 1)O.I.H.G.S.X.
0.4260.10.911619485_atCF514133hypothetical protein LOC100262060-7e-3At5g39760AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)O.I.H.G.S.X.
0.4057.70.931607982_atCF415741hypothetical protein LOC100262060-4e+0At5g48200unknown proteinO.I.H.G.S.X.
0.4057.70.951607428_atCD801140hypothetical protein LOC100268022-2e-2At5g06980unknown proteinO.I.H.G.S.X.
0.3650.70.951612434_atCD710767hypothetical protein LOC100257120-5e-8At2g30520RPT2 (ROOT PHOTOTROPISM 2)O.I.H.G.S.X.
0.3650.70.951617587_atCF403573hypothetical protein LOC100246521-1e+0At4g24750-O.I.H.G.S.X.
0.3141.30.941616568_atCF214090hypothetical protein LOC100261208-2e+0At4g36530hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2937.70.951614923_atCD004083hypothetical protein LOC100245191-9e-24At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)O.I.H.G.S.X.
0.2734.00.911609027_atCB004353hypothetical protein LOC100253650-2e+0At5g01225unknown proteinO.I.H.G.S.X.
0.2327.50.931617541_s_atCB342503hypothetical protein LOC100268009-6e-35At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.297.1GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM287895Pink soft berry B13 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436399V. riparia (VR, PI588259) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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