Co-expression analysis

Gene ID	1611092_at
Gene name
Homology with Arabidopsis	Similar to At3g51890: protein binding / structural molecule (HF=3e-1)
Module size	6 genes
NF	0.15
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1611089_at	CF518359	hypothetical protein LOC100245763 /// hypothetical protein LOC100250595	-	1e+0	At5g49665	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610473_at	CD008037	hypothetical protein LOC100259805	-	3e-1	At3g10980	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1621556_s_at	CB980317	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	2e-4	At2g22430	ATHB6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.10055.1.A1_at, orthologous to the query gene, 1611092_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.10055.1.A1_at	At3g51890	hypothetical protein LOC100192882	-	2e+0	At2g01300	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.11650.1.A1_at	At3g51890	hypothetical protein LOC100192105	-	4e+0	At2g12405	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.13055.1.S1_at	At3g51890	-	-	2e-14	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.19135.1.A1_at	At3g51890	-	-	2e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.18208.1.A1_at	At3g51890	-	-	4e+0	At3g45245	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.13712.1.S1_at	At3g51890	-	-	4e+0	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.16687.1.S1_at	At3g51890	hypothetical protein LOC100194066	-	3e-3	At5g07250	ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.4664.3.A1_a_at	At3g51890	fatty acid elongase	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.1940.1.S1_at	At3g51890	-	-	5e-1	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.3707.1.A1_at	At3g51890	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.12930.1.S1_at	At3g51890	hypothetical protein LOC100191377	-	3e-3	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.3828.1.A1_at	At3g51890	hypothetical protein LOC100191702	-	2e+0	At4g03540	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.4602.1.A1_at	At3g51890	-	-	1e-1	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.3735.1.A1_at	At3g51890	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.2602.1.S1_at	At3g51890	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.11667.1.A1_at	At3g51890	hypothetical protein LOC100274234	-	4e-1	At4g39630	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.11441.1.S1_at	At3g51890	ethylene-responsive factor-like protein 1	-	2e+0	At3g14230	RAP2.2	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.7704.1.A1_at	At3g51890	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.8576.1.A1_at	At3g51890	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.4401.1.A1_at	At3g51890	YGL010w-like protein	-	9e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.4727.1.S1_at	At3g51890	hypothetical protein LOC100273187	-	5e+0	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.15421.1.S1_at	At3g51890	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.2150.1.A1_a_at	At3g51890	Hypothetical protein LOC100193916	-	4e-33	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.17532.1.A1_at	At3g51890	hypothetical protein LOC100279205	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.791.1.S1_s_at	At3g51890	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18290.1.S1_at	At3g51890	hypothetical protein LOC100192073	-	4e+0	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.7858.1.A1_at	At3g51890	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.17172.1.A1_at	At3g51890	-	-	2e+0	At1g55675	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.6051.1.S1_a_at	At3g51890	-	-	2e+0	At1g72430	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.14476.2.A1_at	At3g51890	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.13202.1.A1_at	At3g51890	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.1972.1.A1_at	At3g51890	-	-	2e+1	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.4164.4.A1_x_at	At3g51890	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.15450.1.A1_at	At3g51890	-	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.18385.1.S1_at	At3g51890	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.6484.1.S1_a_at	At3g51890	ubiquitin-conjugating enzyme E2 7 /// Ubiquitin carrier protein	-	1e-32	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.19175.1.A1_at	At3g51890	hypothetical protein LOC100272883	-	2e+0	At1g69780	ATHB13	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.4257.1.S1_at	At3g51890	respiratory burst oxidase protein A	-	5e-12	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.17189.1.A1_at	At3g51890	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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