Co-expression analysis

Gene ID	1611092_at
Gene name
Homology with Arabidopsis	Similar to At3g51890: protein binding / structural molecule (HF=3e-1)
Module size	6 genes
NF	0.15
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1611089_at	CF518359	hypothetical protein LOC100245763 /// hypothetical protein LOC100250595	-	1e+0	At5g49665	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610473_at	CD008037	hypothetical protein LOC100259805	-	3e-1	At3g10980	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621827_at	CF373383	similar to flowering locus C-like MADS-box protein	-	4e-11	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1621556_s_at	CB980317	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	2e-4	At2g22430	ATHB6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.29678.1.S1_at, orthologous to the query gene, 1611092_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.29678.1.S1_at	At3g51890	-	-	1e+0	At1g14880	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.119521.1.S1_s_at	At3g51890	-	-	4e+0	At5g11160	APT5 (Adenine phosphoribosyltransferase 5)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.6352.2.S1_at	At3g51890	-	-	4e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.3894.2.S1_x_at	At3g51890	-	-	5e+0	At5g64180	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.6392.1.S1_at	At3g51890	-	-	8e+0	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.4943.2.S1_x_at	At3g51890	-	-	1e+0	At1g12400	DNA binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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