CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1611092_at

Gene name
Homology with Arabidopsis Similar to At3g51890: protein binding / structural molecule (HF=3e-1)

Module size 6 genes

NF 0.15

%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 75.2 0.94 1611092_at CF208653 - - 3e-1 At3g51890 protein binding / structural molecule O.I. H.G. S.X.
0.44 64.1 0.94 1611089_at CF518359 hypothetical protein LOC100245763 /// hypothetical protein LOC100250595 - 1e+0 At5g49665 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 37.7 0.95 1610473_at CD008037 hypothetical protein LOC100259805 - 3e-1 At3g10980 unknown protein O.I. H.G. S.X.
0.22 25.6 0.94 1621827_at CF373383 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.10 10.3 0.95 1619464_at CA818609 hypothetical protein LOC100254564 - 3e-11 At1g79160 unknown protein O.I. H.G. S.X.
0.06 6.8 0.95 1621556_s_at CB980317 hypothetical protein LOC100246330 /// hypothetical protein LOC100266521 - 2e-4 At2g22430 ATHB6 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 97.1 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.98926.1.S1_at, orthologous to the query gene, 1611092_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 PtpAffx.98926.1.S1_at At3g51890 - - 6e+0 At4g09545 - O.I. H.G. S.X.
0.47 74.6 PtpAffx.6990.1.S1_at At3g51890 hypothetical protein - 1e+0 At2g40113 unknown protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.16358.1.S1_at At3g51890 - - 9e+0 At5g42957 unknown protein O.I. H.G. S.X.
0.33 57.5 Ptp.6270.1.S1_at At3g51890 - - 5e+0 At5g41160 ATPUP12 O.I. H.G. S.X.
0.28 50.5 PtpAffx.103457.1.S1_at At3g51890 hypothetical protein - 1e+1 At5g16870 aminoacyl-tRNA hydrolase O.I. H.G. S.X.
0.22 38.3 Ptp.4551.1.S1_at At3g51890 condensin complex components subunit - 7e-1 At5g62165 AGL42 (AGAMOUS LIKE 42) O.I. H.G. S.X.
0.18 30.8 Ptp.6599.1.S1_at At3g51890 hypothetical protein - 2e-1 At1g77800 PHD finger family protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.63764.1.S1_at At3g51890 hypothetical protein - 3e+0 At3g01345 Expressed protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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